Evidence map›Paper›PMID 18496381›Full record

ArticleCritical care medicine2008

Alterations in the proteome of pulmonary alveolar type II cells in the rat after hepatic ischemia-reperfusion.

Jan Hirsch, Claus U Niemann, Kirk C Hansen, SooJinNa Choi, Xiao Su, James A Frank, Xiaohui Fang, Ryutaro Hirose, Pierre Theodore, Anil Sapru and 2 more

Open access · greenAbstract read
In one paragraph

Article in Critical care medicine, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Evaluation of hepatic and remote organ injury in an experimental liver ischemia-reperfusion model in rats and the effects of quercetin on this damage.Ulusal travma ve acil cerrahi dergisi = Turkish journal of trauma & emergency surgery : TJTES · 2025
    Article
  4. Ischemia/Reperfusion.Comprehensive Physiology · 2016
    Review
  5. Article
  6. TLR4 as receptor for HMGB1-mediated acute lung injury after liver ischemia/reperfusion injury.Laboratory investigation; a journal of technical methods and pathology · 2013
    Article
  7. Cell biology of ischemia/reperfusion injury.International review of cell and molecular biology · 2012
    Review
  8. Article
  9. Beyond fishing: the role of discovery proteomics in mechanistic lung research.American journal of physiology. Lung cellular and molecular physiology · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Jan HirschAnesthesia and Perioperative Care, Mass Spectrometry Facility, University of California, San Francisco, CA, USA. hirschj@anesthesia.ucsf.edu
Claus U Niemann
Kirk C Hansen
SooJinNa Choi
Xiao Su
James A Frank
Xiaohui Fang
Ryutaro Hirose
Pierre Theodore
Anil Sapru
Alma L Burlingame
Michael A Matthay
University of California, San Francisco · US

Funding

UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Holger Willenbring · 1986 to 2026
$30.7M
YEAST THREONINE &SERINE KINASESP41RR001614 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ORTIZ DE MONTELLANO, PAUL R · 1985 to 2011
$24.1M
Therapy for Clinical Acute Lung Injury with APCP50HL074005 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURLINGAME, ALMA L · 2003 to 2007
$9.6M
AT2 RECEPTOR-MEDIATED GENE PROGRAMMING OF SMOOTH MUSCLER01HL058516 · NHLBI · DUKE UNIVERSITY · PI DZAU, VICTOR J · 1997 to 2005
$2.3M
Regulation of alveolar epithelial barrier function by claudinsR01HL088440 · NHLBI · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI FRANK, JAMES A · 2007 to 2011
$2.3M
Regulation of alveolar barrier function by claudinsR56HL088440 · NHLBI · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI FRANK, JAMES A · 2013 to 2013
$380k
NCRR NIH HHS P41 RR001614NCRR NIH HHS RR01614NHLBI NIH HHS HL 58514NHLBI NIH HHS HL 74005NHLBI NIH HHS P50 HL074005NHLBI NIH HHS R01 HL058516NHLBI NIH HHS R01 HL088440NHLBI NIH HHS R56 HL088440NIDDK NIH HHS DK26743NIDDK NIH HHS P30 DK026743
6 · The paper itself

Abstract

objectiveHepatic ischemia-reperfusion can be associated with acute lung injury. Alveolar epithelial type II cells (ATII) play an important role in maintaining lung homeostasis in acute lung injury.

designTo study potentially new mechanisms of hepatic ischemia-reperfusion-induced lung injury, we examined how liver ischemia-reperfusion altered the proteome of ATII.

settingLaboratory investigation. SUBJECTS: Spontaneously breathing male Zucker rats.

interventionsRats were anesthetized with isoflurane. The vascular supply to the left and medial lobe of the liver was clamped for 75 mins and then reperfused. Sham-operated rats were used as controls. After 8 hrs, rats were killed. MEASUREMENTS AND MAIN

resultsBronchoalveolar lavage and differential cell counts were performed, and tumor necrosis factor-alpha and cytokine-induced neutrophil chemotactic factor-1 in plasma were determined by enzyme-linked immunosorbent assay. ATII were isolated, lysed, tryptically digested, and labeled using isobaric tags (iTRAQ). The samples were fractionated by cation exchange chromatography, separated by high-performance liquid-chromatography, and identified using electrospray tandem mass spectrometry. Spectra were interrogated and quantified using ProteinProspector. Quantitative proteomics provided quantitative data for 94 and 97 proteins in the two groups. Significant changes in ATII protein content included 30% to 40% increases in adenosine triphosphate synthases, adenosine triphosphate/adenosine diphosphate translocase, and catalase (all p < .001). Following liver ischemia-reperfusion, there was also a significant increase in the percentage of neutrophils in bronchoalveolar lavage (48% +/- 26%) compared with sham-operated controls (5% +/- 3%) (p < .01), and plasma tumor necrosis factor-alpha levels were also significantly increased.

conclusionsThe proteins identified by quantitative proteomics indicated significant changes in moderators of cell metabolism and host defense in ATII. These findings provide new insights into possible mechanisms responsible for hepatic ischemia-reperfusion-related acute lung injury and suggest that ATII cells in the lung sense and respond to hepatic injury.

Indexed as

ProteomicsAnimalsBronchoalveolar Lavage FluidCell CountEnergy MetabolismEpithelial CellsLiverMalePulmonary AlveoliRatsRats, ZuckerReference ValuesReperfusion Injury

Identifiers

PMID18496381
PMCPMC2442403
OpenAlexW2129787605

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.