Evidence map›Paper›PMID 18496208›Full record

SynthesisPsychiatric genetics2008

PDLIM5 and susceptibility to bipolar disorder: a family-based association study and meta-analysis.

Jiajun Shi, Judith A Badner, Chunyu Liu

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Psychiatric genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jiajun ShiDepartment of Psychiatry, The University of Chicago, Chicago, Illinois 60637, USA.
Judith A Badner
Chunyu Liu
University of Chicago · US

Funding

Fine Genomic Mapping of 13q32 in Bipolar DisorderR01MH065560 · NIMH · UNIVERSITY OF CHICAGO · PI GERSHON, ELLIOT S · 2002 to 2006
$3.0M
GENETIC LINKAGE STUDIES IN BIPOLAR DISORDERSR01MH061613 · NIMH · UNIVERSITY OF CHICAGO · PI GERSHON, ELLIOT S · 2000 to 2009
$2.8M
NIMH NIH HHS MH61613-05A1NIMH NIH HHS R01 MH061613NIMH NIH HHS R01 MH065560Wellcome TrustWellcome Trust 076113
6 · The paper itself

Abstract

objectivesThe postsynaptic density-95/discs large/zone occludens-1 (PDZ) domain and LIM (Lin-11, Isl-1, and Mec-3) domain 5 (PDLIM5) gene has been analyzed as a candidate gene for both schizophrenia and bipolar disorder (BP) in Japanese samples. We performed a family-based association study to test the hypothesis that variants in PDLIM5 increase susceptibility to BP in European-Americans and a meta-analysis to clarify whether there is a single marker consistently contributing to risk for BP.

methodsFive single nucleotide polymorphisms in the PDLIM5 gene were genotyped in 290 European-American BP families. Programs Sibling-Transmission/Disequilibrium Test (sib_tdt) and PDTPHASE were used for allelic and haplotypic association, respectively. We carried out a meta-analysis combing our family-based data and case-control data from two Japanese sample sets and from two genome-wide association (GWA) studies.

resultsOur association analysis showed no single nucleotide polymorphism associated with BP. A rare haplotype consisted of rs10008257 and rs2433320 had nominal association (P=0.045), which failed to survive correction for multiple tests. The meta-analysis identified a significant allelic association at rs2433320 in all combined samples (excluding overlapped samples in GWA: overall odds ratio=0.897, 95% confidence interval: 0.838-0.961, adjusted P=0.012) and in all Caucasian samples (excluding overlapped samples in GWA: overall odds ratio=0.905, 95% confidence interval: 0.843-0.971, adjusted P=0.032), but not in the Japanese samples.

conclusionPDLIM5 may have a minor effect on susceptibility to BP in Caucasians. The findings in Japanese need further confirmation in larger independent samples.

Indexed as

Adaptor Proteins, Signal TransducingAllelesBipolar DisorderChromosomes, Human, Pair 4Confidence IntervalsFamilyGenetic Predisposition to DiseaseHaplotypesHumansLIM Domain ProteinsLinkage DisequilibriumOdds RatioPolymorphism, Single NucleotideAdaptor Proteins, Signal TransducingLIM Domain ProteinsPDLIM5 protein, human

Identifiers

PMID18496208
PMCPMC2572255
OpenAlexW2085062703

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.