Evidence map›Paper›PMID 18495858›Full record

ArticleJournal of clinical microbiology2008

Are variable-number tandem repeats appropriate for genotyping Mycobacterium leprae?

Marc Monot, Nadine Honoré, Charlotte Balière, Baohong Ji, Samba Sow, Patrick J Brennan, Stewart T Cole

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 38 citations in OpenAlex.

  1. Genotyping ofIranian journal of microbiology · 2023
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  6. Transmission of leprosy in Qiubei County, Yunnan, China: insights from an 8-year molecular epidemiology investigation.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

Marc MonotUnité de Génétique Moléculaire Bactérienne, Institut Pasteur, Paris, France.
Nadine Honoré
Charlotte Balière
Baohong Ji
Samba Sow
Patrick J Brennan
Stewart T Cole
Institut Pasteur · FRCentre Pour le Développement des Vaccins-Mali · MLColorado State University · USÉcole Polytechnique Fédérale de Lausanne · CHPitié-Salpêtrière Hospital · FR

Funding

Leprosy Bacillus: From Genotype to Phenotype to ToolsR01AI047197 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI BRENNAN, PATRICK JOSEPH · 2001 to 2009
$3.2M
Leprosy Research Support-Post Genome -26625469N01AI025469 · NIAID · Colorado State University · 2004 to 2004
–
NIAID NIH HHS N01 AI025469NIAID NIH HHS N01-AI25469NIAID NIH HHS R01 AI047197NIAID NIH HHS R01-AI47197
6 · The paper itself

Abstract

Comparative genomics analysis of the Tamil Nadu strain of Mycobacterium leprae has uncovered several polymorphic sites with potential as epidemiological tools. In this study we compared the stability of two different markers of genomic biodiversity of M. leprae in several biopsy samples isolated from the same leprosy patient. The first type comprises five different variable-number tandem repeats (VNTR), while the second is composed of three single nucleotide polymorphisms (SNP). Contrasting results were obtained, since no variation was seen in the SNP profiles of M. leprae from 42 patients from 7 different locations in Mali whereas the VNTR profiles varied considerably. Furthermore, since variation in the VNTR pattern was seen not only between different isolates of M. leprae but also between biopsy samples from the same patient, these VNTR may be too dynamic for use as epidemiological markers for leprosy.

Indexed as

Minisatellite RepeatsAdultAgedAllelesBacterial Typing TechniquesDNA, BacterialDNA PrimersFemaleHumansLeprosyMaleMaliMiddle AgedMolecular EpidemiologyMycobacterium lepraePolymorphism, GeneticDNA, BacterialDNA Primers

Identifiers

PMID18495858
PMCPMC2446919
OpenAlexW2087167276

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.