Evidence map›Paper›PMID 18493058›Full record

ArticleGenetics2008

Ccr4 alters cell size in yeast by modulating the timing of CLN1 and CLN2 expression.

Arkadi Manukyan, Jian Zhang, Uma Thippeswamy, Jingye Yang, Noelle Zavala, Malkanthi P Mudannayake, Mark Asmussen, Colette Schneider, Brandt L Schneider

Abstract readComparative Study
In one paragraph

Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Arkadi ManukyanDepartment of Cell Biology and Biochemistry, Texas Tech University Health Sciences Center, Lubbock, TX 79430, USA.
Jian Zhang
Uma Thippeswamy
Jingye Yang
Noelle Zavala
Malkanthi P Mudannayake
Mark Asmussen
Colette Schneider
Brandt L Schneider

Funding

The Role of Cell Size and G1-phase Cdks in Cell Growth ControlR01GM077874 · NIGMS · TEXAS TECH UNIVERSITY HEALTH SCIS CENTER · PI SCHNEIDER, BRANDT L · 2006 to 2010
$1.4M
NIGMS NIH HHS GM077874NIGMS NIH HHS R01 GM077874
6 · The paper itself

Abstract

Large, multisubunit Ccr4-Not complexes are evolutionarily conserved global regulators of gene expression. Deletion of CCR4 or several components of Ccr4-Not complexes results in abnormally large cells. Since yeast must attain a critical cell size at Start to commit to division, the large size of ccr4 delta cells implies that they may have a size-specific proliferation defect. Overexpression of CLN1, CLN2, CLN3, and SWI4 reduces the size of ccr4 delta cells, suggesting that ccr4 delta cells have a G(1)-phase cyclin deficiency. In support of this, we find that CLN1 and CLN2 expression and budding are delayed in ccr4 delta cells. Moreover, overexpression of CCR4 advances the timing of CLN1 expression, promotes premature budding, and reduces cell size. Genetic analyses suggest that Ccr4 functions independently of Cln3 and downstream of Bck2. Thus, like cln3 delta bck2 delta double deletions, cln3 delta ccr4 delta cells are also inviable. However, deletion of Whi5, a transcriptional repressor of CLN1 and CLN2, restores viability. We find that Ccr4 negatively regulates the half-life of WHI5 mRNAs, and we conclude that, by modulating the stability of WHI5 mRNAs, Ccr4 influences the size-dependent timing of G1-phase cyclin transcription.

Indexed as

Blotting, NorthernCell CycleCyclinsGene Expression Regulation, FungalRepressor ProteinsRibonucleasesSaccharomyces cerevisiae ProteinsYeastsCCR4 protein, S cerevisiaeCLN1 protein, S cerevisiaeCLN2 protein, S cerevisiaeCyclinsRepressor ProteinsRibonucleasesSaccharomyces cerevisiae ProteinsWhi5 protein, S cerevisiae

Identifiers

PMID18493058
PMCPMC2390614

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.