Evidence map›Paper›PMID 18493046›Full record

ArticleGenetics2008

FER1 and FER2 encoding two ferritin complexes in Chlamydomonas reinhardtii chloroplasts are regulated by iron.

Joanne C Long, Frederik Sommer, Michael D Allen, Shu-Fen Lu, Sabeeha S Merchant

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Iron uptake, transport and storage in marine brown algae.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2023
    Review
  5. Article
  6. Single-cell visualization and quantification of trace metals inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  7. Characterization of recombinant protein ferritin fromFood science and biotechnology · 2020
    Article
  8. Regulation of Iron Homeostasis and Use in Chloroplasts.International journal of molecular sciences · 2020
    Review
  9. Different iron storage strategies among bloom-forming diatoms.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  10. Article
  11. Article
  12. Regulating cellular trace metal economy in algae.Current opinion in plant biology · 2017
    Review
  13. Article
  14. Article
  15. Article
  16. Central role for ferritin in the day/night regulation of iron homeostasis in marine phytoplankton.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Article
  18. Article
  19. Iron sparing and recycling in a compartmentalized cell.Current opinion in microbiology · 2013
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Joanne C LongDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095-1569, USA.
Frederik Sommer
Michael D Allen
Shu-Fen Lu
Sabeeha S Merchant
University of California, Los Angeles · US

Funding

UCLA NIGMS T32 Program AssessmentT32GM007185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TORRES, JORGE · 1985 to 2020
$21.7M
Nutritional Cu Signaling and HomeostasisR01GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SABEEHA MERCHANT · 1995 to 2026
$4.6M
Function, Localization, and Expression of Chl27F31GM077066 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ALLEN, MICHAEL D · 2006 to 2007
$60k
NIGMS NIH HHS F31 GM077066NIGMS NIH HHS GM07185NIGMS NIH HHS GM077066NIGMS NIH HHS R01 GM042143NIGMS NIH HHS T32 GM007185
6 · The paper itself

Abstract

Two unlinked genes FER1 and FER2 encoding ferritin subunits were identified in the Chlamydomonas genome. An improved FER2 gene model, built on the basis of manual sequencing and incorporation of unplaced reads, indicated 49% identity between the ferritin subunits. Both FER1 and FER2 transcripts are increased in abundance as iron nutrition is decreased but the pattern for each gene is distinct. Using subunit-specific antibodies, we monitored expression at the protein level. In response to low iron, ferritin1 subunits and the ferritin1 complex are increased in parallel to the increase in FER1 mRNA. Nevertheless, the iron content of the ferritin1 complex is decreased. This suggests that increased expression results in increased capacity for iron binding in the chloroplast of iron-limited cells, which supports a role for ferritin1 as an iron buffer. On the other hand, ferritin2 abundance is decreased in iron-deprived cells, indicative of the operation of iron-nutrition-responsive regulation at the translational or post-translational level for FER2. Both ferritin subunits are plastid localized but ferritin1 is quantitatively recovered in soluble extracts of cells while ferritin2 is found in the particulate fraction. Partial purification of the ferritin1 complex indicates that the two ferritins are associated in distinct complexes and do not coassemble. The ratio of ferritin1 to ferritin2 is 70:1 in iron-replete cells, suggestive of a more dominant role of ferritin1 in iron homeostasis. The Volvox genome contains orthologs of each FER gene, indicating that the duplication of FER genes and potential diversification of function occurred prior to the divergence of species in the Volvocales.

Indexed as

Gene Expression RegulationAmino Acid SequenceAnimalsBase SequenceChlamydomonas reinhardtiiChloroplastsDNA PrimersFerritinsImmunoblottingIronModels, GeneticMolecular Sequence DataSequence Analysis, DNAVolvoxDNA PrimersFerritinsIron

Identifiers

PMID18493046
PMCPMC2390593
OpenAlexW2147099018

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.