Evidence map›Paper›PMID 18492667›Full record

ArticleThe Journal of biological chemistry2008

ATP hydrolysis and synthesis of a rotary motor V-ATPase from Thermus thermophilus.

Masahiro Nakano, Hiromi Imamura, Masashi Toei, Masatada Tamakoshi, Masasuke Yoshida, Ken Yokoyama

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
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  5. Bile acid fitness determinants of abioRxiv : the preprint server for biology · 2023
    Article
  6. Article
  7. Article
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  9. Review
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  11. Article
  12. Adaptation to Varying Salinity inFrontiers in microbiology · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Cryo-EM studies of the rotary HBiophysics and physicobiology · 2019
    Review
  17. Article
  18. Article
  19. Structure and dynamics of rotary VCellular and molecular life sciences : CMLS · 2018
    Review
  20. Cryo EM structure of intact rotary HNature communications · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Masahiro NakanoChemical Resources Laboratory, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama, Japan.
Hiromi Imamura
Masashi Toei
Masatada Tamakoshi
Masasuke Yoshida
Ken Yokoyama
Tokyo Institute of Technology · JPJapan Science and Technology Agency · JPTokyo University of Pharmacy and Life Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vacuolar-type H(+)-ATPase (V-ATPase) catalyzes ATP synthesis and hydrolysis coupled with proton translocation across membranes via a rotary motor mechanism. Here we report biochemical and biophysical catalytic properties of V-ATPase from Thermus thermophilus. ATP hydrolysis of V-ATPase was severely inhibited by entrapment of Mg-ADP in the catalytic site. In contrast, the enzyme was very active for ATP synthesis (approximately 70 s(-1)) with the K(m) values for ADP and phosphate being 4.7 +/- 0.5 and 460 +/- 30 microm, respectively. Single molecule observation showed V-ATPase rotated in a 120 degrees stepwise manner, and analysis of dwelling time allowed the binding rate constant k(on) for ATP to be estimated ( approximately 1.1 x 10(6) m(-1) s(-1)), which was much lower than the k(on) (= V(max)/K(m)) for ADP ( approximately 1.4 x 10(7) m(-1) s(-1)). The slower k(on)(ATP) than k(on)(ADP) and strong Mg-ADP inhibition may contribute to prevent wasteful consumption of ATP under in vivo conditions when the proton motive force collapses.

Indexed as

HydrolysisAdenosine DiphosphateAdenosine TriphosphatasesAdenosine TriphosphateCatalysisKineticsLiposomesMagnesiumModels, BiologicalMutationNucleotidesPhosphatesProtonsThermus thermophilusTime FactorsAdenosine DiphosphateAdenosine TriphosphatasesAdenosine TriphosphateLiposomesMagnesiumNucleotidesPhosphatesProtons

Identifiers

PMID18492667
PMCPMC3258951
OpenAlexW2043281233

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.