Evidence map›Paper›PMID 18488250›Full record

ArticleParasitology research2008

Detection of Blastocystis from stool samples using real-time PCR.

Morris Saffold Jones, Robert D Ganac, Greg Hiser, N Ryan Hudson, Andy Le, Christopher M Whipps

Abstract readEvaluation Study
PubMed Publisher
In one paragraph

Article in Parasitology research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  6. Epidemiological Aspects of Blastocystis Colonization in Children in Ilero, Nigeria.The American journal of tropical medicine and hygiene · 2016
    Article
  7. Occurrence ofPeerJ · 2016
    Article
  8. Review
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  10. Subtype distribution of Blastocystis isolates identified in a Sydney population and pathogenic potential of Blastocystis.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2013
    Article
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  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Morris Saffold JonesClinical Investigation Facility, David Grant USAF Medical Center, Travis AFB, CA 94535, USA. drmorrisj@yahoo.com
Robert D Ganac
Greg Hiser
N Ryan Hudson
Andy Le
Christopher M Whipps
David Grant USAF Medical Center · USSUNY College of Environmental Science and Forestry · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We developed a real-time LC PCR assay to detect a 152 bp sequence in an uncharacterized region of the Blastocystis genome. The described assay detected 11 of 11 ATCC strains of Blastocystis from subtypes 1, 3, and 4. Three of three stool samples from Oregon and California military personnel that were negative for Blastocystis by an ova and parasite test as well as a conventional PCR assay were positive for Blastocystis using our real-time LC PCR assay. Diagnosis of Blastocystis infections using this sensitive method, including DNA extraction and real-time PCR, only requires 3 h. The lower limit of detection for Blastocystis in stool using the real-time LC PCR assay was calculated to be 760 cells of Blastocystis per 100 mg of stool, an estimated 760 parasites per reaction. The assay did not cross-react with Ruminococcus hansenii, Anarococcus hydrogenalis, Bifidobacterium adolescentis, Fusobacterium prausnitzii, Staphylococcus aureus, Escherichia coli, Enterococcus faecalis, or Lactobacillus acidophilus. Because of the ease of use, sensitivity, specificity, and increase in Blastocystis infections in the USA we believe this assay has the potential to be useful as a clinical diagnosis tool of Blastocystis infection.

Indexed as

AnimalsBacteriaBlastocystisBlastocystis InfectionsCaliforniaDNA, ProtozoanFecesHumansMolecular Sequence DataOregonPhylogenyPolymerase Chain ReactionSensitivity and SpecificitySequence Analysis, DNASequence Homology, Nucleic AcidTime FactorsDNA, Protozoan

Identifiers

PMID18488250
OpenAlexW2135933697

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.