Evidence map›Paper›PMID 18487951›Full record

ArticleEpigenetics

DNA hypomethylation caused by Lsh deletion promotes erythroleukemia development.

Tao Fan, Anja Schmidtmann, Sichuan Xi, Victorino Briones, Heming Zhu, Hyung Chan Suh, John Gooya, Jonathan R Keller, Hong Xu, Jean Roayaei and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Epigenetics. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 39 citations in OpenAlex.

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  15. Environmental toxicants, epigenetics, and cancer.Advances in experimental medicine and biology · 2013
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Tao FanLaboratory of Cancer Prevention, SAIC-FCRDC, Basic Research Program, National Cancer Institute, Frederick, Maryland, USA.
Anja Schmidtmann
Sichuan Xi
Victorino Briones
Heming Zhu
Hyung Chan Suh
John Gooya
Jonathan R Keller
Hong Xu
Jean Roayaei
Miriam Anver
Sandra Ruscetti
Kathrin Muegge
Frederick National Laboratory for Cancer Research · USScience Applications International Corporation (United States) · USNational Cancer Institute · USNational Institute of Statistical Sciences · US

Funding

Molecular-Cellular Regulation of Hematopoietic Stem CellsZIABC010001 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KELLER, JONATHAN R · 2009 to 2024
$16.8M
Molecular Basis for the Pathogenesis of Murine RetrovirusesZIABC005657 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RUSCETTI, SANDRA K · 2009 to 2013
$5.2M
GENE REARRANGEMENT AND DNA REPAIRZ01BC010014 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MUEGGE, KATHRIN · 1996 to 2008
$1.5M
Intramural NIH HHS Z01 BC010014PHS HHS N01-C0-12400
6 · The paper itself

Abstract

Hematopoietic malignancies are frequently associated with DNA hypomethylation but the molecular mechanisms involved in tumor formation remain poorly understood. Here we report that mice lacking Lsh develop leukemia associated with DNA hypomethylation and oncogene activation. Lsh is a member of the SNF2 chromatin remodeling family and is required for de novo methylation of genomic DNA. Mice that received Lsh deficient hematopoietic progenitors showed severe impairment of hematopoiesis, suggesting that Lsh is necessary for normal hematopoiesis. A subset of mice developed erythroleukemia, a tumor that does not spontaneously occur in mice. Tumor tissues were CpG hypomethylated and showed a modest elevation of the transcription factor PU.1, an oncogene that is crucial for Friend virus induced erythroleukemia. Analysis of Lsh(-/-) hematopoietic progenitors revealed widespread DNA hypomethylation at repetitive sequences and hypomethylation at specific retroviral elements within the PU.1 gene. Wild type cells showed Lsh and Dnmt3b binding at the retroviral elements located within the PU.1 gene. On the other hand, Lsh deficient cells had no detectable Dnmt3b association suggesting that Lsh is necessary for recruitment of Dnmt3b to its target. Furthermore, Lsh(-/-) hematopoietic precursors showed impaired suppression of retroviral elements in the PU.1 gene, an increase of PU.1 transcripts and protein levels. Thus DNA hypomethylation caused by Lsh depletion is linked to transcriptional upregulation of retroviral elements and oncogenes such as PU.1 which in turn may promote the development of erythroleukemia in mice.

Indexed as

DNA MethylationAnimalsDNA (Cytosine-5-)-MethyltransferasesDNA HelicasesDNA Methyltransferase 3BGene Expression RegulationHematopoiesisLeukemia, Erythroblastic, AcuteMiceMice, Inbred C57BLProtein BindingProto-Oncogene ProteinsProto-Oncogene Protein Spi-1RetroviridaeTrans-ActivatorsDNA (Cytosine-5-)-MethyltransferasesDNA HelicasesDNA Methyltransferase 3Blymphoid specific helicase, mouseProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Trans-Activators

Identifiers

PMID18487951
PMCPMC3113485
OpenAlexW2083227194

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.