Evidence map›Paper›PMID 18487342›Full record

ArticleJournal of bacteriology2008

Impact of aeration and heme-activated respiration on Lactococcus lactis gene expression: identification of a heme-responsive operon.

Martin Bastian Pedersen, Christel Garrigues, Karine Tuphile, Célia Brun, Karin Vido, Mads Bennedsen, Henrik Møllgaard, Philippe Gaudu, Alexandra Gruss

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Adaptation ofMicroorganisms · 2023
    Article
  3. Transcriptomics ofFrontiers in bioengineering and biotechnology · 2023
    Article
  4. Probiotic Effects and Metabolic Products ofFoods (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Higher nisin yield is reached with glutathione and pyruvate compared with heme in Lactococcus lactis N8.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Genetics of Lactococci.Microbiology spectrum · 2019
    Review
  11. Article
  12. Article
  13. Article
  14. Frontiers in microbiology · 2018
    Article
  15. Adaptation to Aerobic Environment ofFrontiers in microbiology · 2018
    Article
  16. Article
  17. Stress Physiology of Lactic Acid Bacteria.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Martin Bastian PedersenDepartment of Physiology, Chr Hansen A/S, DK-2970 Hørsholm, Denmark. dkmbp@chr-hansen.com
Christel Garrigues
Karine Tuphile
Célia Brun
Karin Vido
Mads Bennedsen
Henrik Møllgaard
Philippe Gaudu
Alexandra Gruss
Chr. Hansen (Denmark) · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lactococcus lactis is a widely used food bacterium mainly characterized for its fermentation metabolism. However, this species undergoes a metabolic shift to respiration when heme is added to an aerobic medium. Respiration results in markedly improved biomass and survival compared to fermentation. Whole-genome microarrays were used to assess changes in L. lactis expression under aerobic and respiratory conditions compared to static growth, i.e., nonaerated. We observed the following. (i) Stress response genes were affected mainly by aerobic fermentation. This result underscores the differences between aerobic fermentation and respiration environments and confirms that respiration growth alleviates oxidative stress. (ii) Functions essential for respiratory metabolism, e.g., genes encoding cytochrome bd oxidase, menaquinone biosynthesis, and heme uptake, are similarly expressed under the three conditions. This indicates that cells are prepared for respiration once O(2) and heme become available. (iii) Expression of only 11 genes distinguishes respiration from both aerobic and static fermentation cultures. Among them, the genes comprising the putative ygfCBA operon are strongly induced by heme regardless of respiration, thus identifying the first heme-responsive operon in lactococci. We give experimental evidence that the ygfCBA genes are involved in heme homeostasis.

Indexed as

Gene Expression ProfilingGene Expression RegulationAerobiosisArtificial Gene Fusionbeta-GalactosidaseBlotting, NorthernFermentationGenes, BacterialGenes, ReporterHemeLactococcus lactisOligonucleotide Array Sequence AnalysisOperonOxidative StressReverse Transcriptase Polymerase Chain ReactionRNA, Bacterialbeta-GalactosidaseHemeRNA, Bacterial

Identifiers

PMID18487342
PMCPMC2447008
OpenAlexW2143240949

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.