Evidence map›Paper›PMID 18487337›Full record

ArticleJournal of bacteriology2008

The evolution of class 1 integrons and the rise of antibiotic resistance.

Michael Gillings, Yan Boucher, Maurizio Labbate, Andrew Holmes, Samyuktha Krishnan, Marita Holley, H W Stokes

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 190 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
190citing papers in PubMed, 1 pooled it
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

190 citing papers in PubMed, 1 synthesis or guideline pooled it, 492 citations in OpenAlex.

  1. Pooled it
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  11. Coexistence of aInfection and drug resistance · 2026
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  12. Article
  13. Review
  14. Article
  15. Article
  16. Lack of Association BetweenAntibiotics (Basel, Switzerland) · 2025
    Article
  17. Review
  18. Article
  19. Article
  20. Characterization of genetic context ofFrontiers in microbiology · 2025
    Article

130 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Michael GillingsDepartment of Biological Sciences, Macquarie University, Sydney, NSW 2109, Australia. michael.gillings@mq.edu.au
Yan Boucher
Maurizio Labbate
Andrew Holmes
Samyuktha Krishnan
Marita Holley
H W Stokes
Macquarie University · AUUniversity of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Class 1 integrons are central players in the worldwide problem of antibiotic resistance, because they can capture and express diverse resistance genes. In addition, they are often embedded in promiscuous plasmids and transposons, facilitating their lateral transfer into a wide range of pathogens. Understanding the origin of these elements is important for the practical control of antibiotic resistance and for exploring how lateral gene transfer can seriously impact on, and be impacted by, human activities. We now show that class 1 integrons can be found on the chromosomes of nonpathogenic soil and freshwater Betaproteobacteria. Here they exhibit structural and sequence diversity, an absence of antibiotic resistance genes, and a phylogenetic signature of lateral transfer. Some examples are almost identical to the core of the class 1 integrons now found in pathogens, leading us to conclude that environmental Betaproteobacteria were the original source of these genetic elements. Because these elements appear to be readily mobilized, their lateral transfer into human commensals and pathogens was inevitable, especially given that Betaproteobacteria carrying class 1 integrons are common in natural environments that intersect with the human food chain. The strong selection pressure imposed by the human use of antimicrobial compounds then ensured their fixation and global spread into new species.

Indexed as

Evolution, MolecularIntegronsSoil MicrobiologyBetaproteobacteriaChromosomes, BacterialDNA, BacterialDrug Resistance, MicrobialFresh WaterGene OrderGene Transfer, HorizontalMolecular Sequence DataPhylogenyPlasmidsSequence Analysis, DNADNA, Bacterial

Identifiers

PMID18487337
PMCPMC2447024
OpenAlexW2144203006

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.