Evidence map›Paper›PMID 18487296›Full record

ArticleBiophysical journal2008

Adhesive dynamics simulation of neutrophil arrest with stochastic activation.

Ellen F Krasik, Kelly E Caputo, Daniel A Hammer

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Adhesive dynamics.Journal of biomechanical engineering · 2014
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ellen F KrasikDepartment of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Kelly E Caputo
Daniel A Hammer
University of Pennsylvania · US

Funding

VASCULAR RELATIONS OF BLOOD CELLS AND PROTEINSP01HL018208 · NHLBI · UNIVERSITY OF ROCHESTER · PI WAUGH, RICHARD E · 1985 to 2014
$24.7M
Blood Systems BiologyR33HL087353 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI HAMMER, DANIEL A · 2006 to 2008
$820k
NHLBI NIH HHS HL18208NHLBI NIH HHS HL87353NHLBI NIH HHS P01 HL018208NHLBI NIH HHS R33 HL087353
6 · The paper itself

Abstract

The transition from rolling to firm adhesion is a key step in the adhesion cascade that permits a neutrophil to exit the bloodstream and make its way to a site of inflammation. In this work, we construct an integrated model of neutrophil activation and arrest that combines a biomechanical model of neutrophil adhesion and adhesive dynamics, with fully stochastic signal transduction modeling, in the form of kinetic Monte Carlo simulation within the microvilli. We employ molecular binding parameters gleaned from the literature and from simulation of cell-free rolling mediated by selectin molecules. We create a simplified model of lymphocyte function-associated antigen-1 activation that links P-selectin glycoprotein ligand-1 ligation to integrin activation. The model utilizes an energy profile of various integrin activation states drawn from literature data and permits manipulation of signal diffusivity within the microvillus. Our integrated model recreates neutrophil arrest within physiological timescales, and we demonstrate that increasing signal diffusivity within a microvillus accelerates arrest. If the energy barrier between free unactivated and free activated lymphocyte function-associated antigen-1 increases, the period of rolling before arrest increases. We further demonstrate that, within our model, modification of endothelial ligand surface densities can control arrest. In addition, the relative concentrations of signaling molecules control the fractional activation of the overall signaling pathway and the rolling time to arrest. This work presents the first, to our knowledge, fully stochastic model of neutrophil activation, which, though simplified, can recapitulate significant physiological details of neutrophil arrest yet retains the capacity to incorporate additional information regarding mechanisms of neutrophil signal transduction as they are elucidated.

Indexed as

Models, CardiovascularCell MovementComputer SimulationCytokinesEndothelium, VascularNeutrophil ActivationNeutrophilsSelectinsStochastic ProcessesCytokinesSelectins

Identifiers

PMID18487296
PMCPMC2483747
OpenAlexW2000558918

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.