Evidence map›Paper›PMID 18487131›Full record

ReviewPhilosophical transactions of the Royal Society of London. Series B, Biological sciences2008

Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms.

F Robert Tabita, Thomas E Hanson, Sriram Satagopan, Brian H Witte, Nathan E Kreel

Open access · greenAbstract readReview
In one paragraph

Review in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 159 citations in OpenAlex.

  1. Rubisco is slow across the tree of life.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Review
  3. Article
  4. Rubisco is evolving for improved catalytic efficiency and COProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Atypical Carboxysome Loci: JEEPs or Junk?Frontiers in microbiology · 2022
    Review
  12. Article
  13. Transcriptome-Wide Gene Expression Plasticity inInternational journal of molecular sciences · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Photorespiration: The Futile Cycle?Plants (Basel, Switzerland) · 2021
    Review
  19. Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

F Robert TabitaDepartment of Microbiology, The Ohio State University, Columbus, OH 43210-1292, USA. tabita.1@osu.edu <tabita.1@osu.edu>
Thomas E Hanson
Sriram Satagopan
Brian H Witte
Nathan E Kreel
The Ohio State University · USBiotechnology Institute · US

Funding

FUNCTION AND ASSEMBLY OF CO2 ASSIMILATORY ENZYMESR01GM024497 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI TABITA, F ROBERT · 1985 to 2005
$1.2M
NIGMS NIH HHS GM 24497NIGMS NIH HHS R01 GM024497
6 · The paper itself

Abstract

Ribulose 1,5-bisphosphate (RuBP) carboxylase/oxygenase (RubisCO) catalyses the key reaction by which inorganic carbon may be assimilated into organic carbon. Phylogenetic analyses indicate that there are three classes of bona fide RubisCO proteins, forms I, II and III, which all catalyse the same reactions. In addition, there exists another form of RubisCO, form IV, which does not catalyse RuBP carboxylation or oxygenation. Form IV is actually a homologue of RubisCO and is called the RubisCO-like protein (RLP). Both RubisCO and RLP appear to have evolved from an ancestor protein in a methanogenic archaeon, and comprehensive analyses indicate that the different forms (I, II, III and IV) contain various subgroups, with individual sequences derived from representatives of all three kingdoms of life. The diversity of RubisCO molecules, many of which function in distinct milieus, has provided convenient model systems to study the ways in which the active site of this protein has evolved to accommodate necessary molecular adaptations. Such studies have proven useful to help provide a framework for understanding the molecular basis for many important aspects of RubisCO catalysis, including the elucidation of factors or functional groups that impinge on RubisCO carbon dioxide/oxygen substrate discrimination.

Indexed as

Amino Acid SequenceArchaeaBacteriaEvolution, MolecularGenetic VariationMethanosarcinaceaeModels, MolecularMolecular Sequence DataPhylogenyRibulose-Bisphosphate CarboxylaseRibulose-Bisphosphate Carboxylase

Identifiers

PMID18487131
PMCPMC2606765
OpenAlexW2138695863

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.