Evidence map›Paper›PMID 18485892›Full record

ArticleBiochemical and biophysical research communications2008

Genetic determination of the role of PU.1 in macrophage gene expression.

Myungsoo Joo, Minjae Kwon, Anser C Azim, Ruxana T Sadikot, Timothy S Blackwell, John W Christman

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Myungsoo JooDivision of Allergy, Pulmonary and Critical Care Medicine, Vanderbilt University Medical Center, B1222 MCN, Nashville, TN 37232-2650, USA. Myungsoo.Joo@vanderbilt.edu
Minjae Kwon
Anser C Azim
Ruxana T Sadikot
Timothy S Blackwell
John W Christman
Vanderbilt University Medical Center · USUniversity of Illinois Chicago · USJesse Brown VA Medical Center · US

Funding

Role of Eicosanoids In Modulating Endotoxin Induced LiveP01HL066196 · NHLBI · VANDERBILT UNIVERSITY · PI BRIGHAM, KENNETH L · 2002 to 2006
$9.0M
Macrophage Gene Expression in Acute Lung InflammationR01HL075557 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHRISTMAN, JOHN W · 2004 to 2016
$4.8M
MOLECULAR REGULATION OF LUNG INFLAMMATION BY NF-KBR01HL061419 · NHLBI · VANDERBILT UNIVERSITY · PI BLACKWELL, TIMOTHY S · 1999 to 2006
$1.5M
NHLBI NIH HHS HL061419NHLBI NIH HHS HL066196NHLBI NIH HHS HL075557NHLBI NIH HHS P01 HL066196NHLBI NIH HHS R01 HL061419NHLBI NIH HHS R01 HL075557
6 · The paper itself

Abstract

PU.1, an Ets family transcription factor, mediates macrophage effector function in inflammation by regulating gene expression. But, the extent and nature of PU.1 function in gene expression has not been genetically determined because ablation of PU.1 gene abolishes macrophage development. Here, we epigenetically suppressed PU.1 by stably expressing PU.1 specific siRNA in macrophages, and determined the effect of PU.1 deficiency on expressions of key inflammatory genes: Toll-like receptor 4 (TLR4), cyclooxygenase-2 (COX-2), and macrophage inflammatory protein-1alpha (MIP-1alpha). PU.1-silenced cell lines expressed lower TLR4 mRNA and COX-2 protein, but higher MIP-1alpha protein, than controls. Over-expression of PU.1 suppressed lipopolysaccharide-induced MIP-1alpha production. PU.1 occupied proximal and distal cognate sites in the endogenous MIP-1alpha promoter, but dissociated only from the distal sites in response to lipopolysaccharide, suggesting a novel negative regulatory mechanism by PU.1. Together, our results defined PU.1 function in differentially regulating expressions of TLR4, COX-2, and MIP-1alpha.

Indexed as

Gene Expression RegulationAnimalsCell LineChemokine CCL3Cyclooxygenase 2MacrophagesMiceProto-Oncogene ProteinsProto-Oncogene Protein Spi-1RNA, MessengerToll-Like Receptor 4Trans-ActivatorsUp-RegulationChemokine CCL3Cyclooxygenase 2Proto-Oncogene ProteinsProto-Oncogene Protein Spi-1Ptgs2 protein, mouseRNA, MessengerTlr4 protein, ratToll-Like Receptor 4Trans-Activators

Identifiers

PMID18485892
PMCPMC2494535
OpenAlexW2093470049

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.