Evidence map›Paper›PMID 18485884›Full record

ArticleArchives of biochemistry and biophysics2008

Specificity of ligand binding to transport sites: Ca2+ binding to the Ca2+ transport ATPase and its dependence on H+ and Mg2+.

Sufi Zafar, Arif Hussain, Yueyong Liu, David Lewis, G Inesi

Abstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Dynamics-Driven Allostery Underlies CaBiophysical journal · 2020
    Article
  4. Review
  5. Article
  6. Article
  7. The CaMolecular bioSystems · 2017
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sufi ZafarT.J. Watson Research Center, IBM, Route 134, P.O. Box 218, Yorktown Heights, NY 10598, USA.
Arif Hussain
Yueyong Liu
David Lewis
G Inesi

Funding

Molecular and Cellular Studies of Ca2+ Transport ATPaseR01HL069830 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI INESI, GIUSEPPE · 2002 to 2010
$4.6M
NHLBI NIH HHS R01 HL069830NHLBI NIH HHS R01-HL-69830
6 · The paper itself

Abstract

Ligand binding to transport sites constitutes the initial step in the catalytic cycle of transport ATPases. Here, we consider the well characterized Ca2+ ATPase of sarcoplasmic reticulum (SERCA) and describe a series of Ca2+ binding isotherms obtained by equilibrium measurements in the presence of various H+ and Mg2+ concentrations. We subject the isotherms to statistical mechanics analysis, using a model based on a minimal number of mechanistic steps. The analysis allows satisfactory fits and yields information on occupancy of the specific Ca2+ sites under various conditions. It also provides a fundamental method for analysis of binding specificity to transport sites under equilibrium conditions that lead to tightly coupled catalytic activation.

Indexed as

ProtonsAnimalsBinding SitesCalciumCalcium-Transporting ATPasesCationsLigandsMagnesiumModels, BiologicalProtein BindingRabbitsSarcoplasmic ReticulumCalciumCalcium-Transporting ATPasesCationsLigandsMagnesiumProtons

Identifiers

PMID18485884
PMCPMC2756220

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.