Evidence map›Paper›PMID 18485736›Full record

ReviewJournal of structural biology2008

Multi-disciplinary studies of viruses: the role of structure in shaping the questions and answers.

John E Johnson

Open access · greenAbstract readReview
In one paragraph

Review in Journal of structural biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. The Basic Architecture of Viruses.Sub-cellular biochemistry · 2024
    Review
  2. From lows to highs: using low-resolution models to phase X-ray data.Acta crystallographica. Section D, Biological crystallography · 2013
    Review
  3. Review
  4. Self-catalyzed growth of S layers via an amorphous-to-crystalline transition limited by folding kinetics.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

John E JohnsonDepartment of Molecular Biology, The Scripps Research Institute, MB-31, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA. jackj@scripps.edu
Scripps Research Institute · US

Funding

Studies of large and small-scale virus capsid dynamicsR01GM054076 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI JOHNSON, JOHN EMIL · 1995 to 2014
$6.2M
High Resolution of Structural Studies of Insect VirusesR37GM034220 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI JOHNSON, JOHN EMIL · 2002 to 2011
$4.7M
NIGMS NIH HHS R01 GM054076NIGMS NIH HHS R37 GM034220
6 · The paper itself

Abstract

This contribution to the 50th anniversary issue of the Journal of Structural Biology traces a path in which the author evolved from seeing macromolecular structure as end in it self to a means of organizing and correlating data from many sources. The author looks at where we have been and where we are going in this enterprise and the role that structure plays in defining ever more ambitious biological questions and testing and refining models that incorporate data from many techniques. In this, essentially, personal account, the author reflects on 35 years of structural virology and the stages experienced; from "stand alone" crystallography of virus particles to the study of virus assembly and maturation in vitro and eventually into the entire virus infection process from particle cell entry to egress. In the process data from many sources were incorporated into reasonable and testable models based on structures ranging in resolution from near-atomic determined by crystallography, to nanometer, determined by electron cryo-microscopy and image reconstruction, to five nanometer tomographic studies in the cell. The technological development over this period, for structural studies at all resolutions and functional studies that were unimaginable three decades ago, has been astonishing. Here we look at an aspect of this development applied to virology.

Indexed as

Biomedical ResearchCryoelectron MicroscopyCrystallography, X-RayImage Processing, Computer-AssistedViruses

Identifiers

PMID18485736
PMCPMC2952275
OpenAlexW2009707643

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.