Evidence map›Paper›PMID 18483570›Full record

ArticleInternational journal of plant genomics2008

The generation challenge programme platform: semantic standards and workbench for crop science.

Richard Bruskiewich, Martin Senger, Guy Davenport, Manuel Ruiz, Mathieu Rouard, Tom Hazekamp, Masaru Takeya, Koji Doi, Kouji Satoh, Marcos Costa and 47 more

Abstract read
In one paragraph

Article in International journal of plant genomics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

57 authors.

Richard BruskiewichInternational Rice Research Institute, Metro Manila, Philippines. r.bruskiewich@cgiar.org
Martin Senger
Guy Davenport
Manuel Ruiz
Mathieu Rouard
Tom Hazekamp
Masaru Takeya
Koji Doi
Kouji Satoh
Marcos Costa
Reinhard Simon
Jayashree Balaji
Akinnola Akintunde
Ramil Mauleon
Samart Wanchana
Trushar Shah
Mylah Anacleto
Arllet Portugal
Victor Jun Ulat
Supat Thongjuea
Kyle Braak
Sebastian Ritter
Alexis Dereeper
Milko Skofic
Edwin Rojas
Natalia Martins
Georgios Pappas
Ryan Alamban
Roque Almodiel
Lord Hendrix Barboza
Jeffrey Detras
Kevin Manansala
Michael Jonathan Mendoza
Jeffrey Morales
Barry Peralta
Rowena Valerio
Yi Zhang
Sergio Gregorio
Joseph Hermocilla
Michael Echavez
Jan Michael Yap
Andrew Farmer
Gary Schiltz
Jennifer Lee
Terry Casstevens
Pankaj Jaiswal
Ayton Meintjes
Mark Wilkinson
Benjamin Good
James Wagner
Jane Morris
David Marshall
Anthony Collins
Shoshi Kikuchi
Thomas Metz
Graham McLaren
Theo van Hintum

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Generation Challenge programme (GCP) is a global crop research consortium directed toward crop improvement through the application of comparative biology and genetic resources characterization to plant breeding. A key consortium research activity is the development of a GCP crop bioinformatics platform to support GCP research. This platform includes the following: (i) shared, public platform-independent domain models, ontology, and data formats to enable interoperability of data and analysis flows within the platform; (ii) web service and registry technologies to identify, share, and integrate information across diverse, globally dispersed data sources, as well as to access high-performance computational (HPC) facilities for computationally intensive, high-throughput analyses of project data; (iii) platform-specific middleware reference implementations of the domain model integrating a suite of public (largely open-access/-source) databases and software tools into a workbench to facilitate biodiversity analysis, comparative analysis of crop genomic data, and plant breeding decision making.

Identifiers

PMID18483570
PMCPMC2375972

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.