Evidence map›Paper›PMID 18480377›Full record

ArticlePlant physiology2008

Circadian timekeeping during early Arabidopsis development.

Patrice A Salomé, Qiguang Xie, C Robertson McClung

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
  2. Article
  3. The interplay between the circadian clock and abiotic stress responses mediated by ABF3 and CCA1/LHY.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
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  7. Article
  8. Molecular mechanisms of Evening Complex activity inProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Review
  10. Article
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  12. Article
  13. Review
  14. Review
  15. Article
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  17. Article
  18. Allelic polymorphism of GIGANTEA is responsible for naturally occurring variation in circadian period in Brassica rapa.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  19. Article
  20. GIGANTEA - an emerging story.Frontiers in plant science · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Patrice A SaloméDartmouth College, Department of Biological Sciences, Hanover, New Hampshire 03755-3576, USA.
Qiguang Xie
C Robertson McClung
Dartmouth College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The circadian coordination of organismal biology with the local temporal environment has consequences for fitness that may become manifest early in development. We directly explored the development of the Arabidopsis (Arabidopsis thaliana) clock in germinating seedlings by monitoring expression of clock genes. Clock function is detected within 2 d of imbibition (hydration of the dried seed). Imbibition is sufficient to synchronize individuals in a population in the absence of entraining cycles of light-dark or temperature, although light-dark and temperature cycles accelerate the appearance of rhythmicity and improve synchrony among individuals. Oscillations seen during the first 2 d following imbibition are dependent on the clock genes LATE ELONGATED HYPOCOTYL, TIMING OF CAB EXPRESSION1, ZEITLUPE, GIGANTEA, PSEUDO-RESPONSE REGULATOR7 (PRR7), and PRR9, although later circadian oscillations develop in mutants defective in each of these genes. In contrast to circadian rhythmicity, which developed under all conditions, amplitude was the only circadian parameter that demonstrated a clear response to the light environment; clock amplitude is low in the dark and high in the light. A circadian clock entrainable by temperature cycles in germinating etiolated seedlings may synchronize the buried seedling with the local daily cycles before emergence from the soil and exposure to light.

Indexed as

Biological ClocksCircadian RhythmArabidopsisArabidopsis ProteinsCotyledonDNA-Binding ProteinsGenes, ReporterLightLuciferases, FireflyMutationPhotoperiodSeedlingsSeedsTemperatureTranscription FactorsWaterArabidopsis ProteinsCCA1 protein, ArabidopsisDNA-Binding ProteinsLHY protein, ArabidopsisLuciferases, FireflyTOC1 protein, ArabidopsisTranscription FactorsWater

Identifiers

PMID18480377
PMCPMC2442538
OpenAlexW2023920939

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.