Evidence map›Paper›PMID 18480263›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Signal processing by the HOG MAP kinase pathway.

Pascal Hersen, Megan N McClean, L Mahadevan, Sharad Ramanathan

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed.

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69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Pascal HersenFAS Center for Systems Biology and School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA.
Megan N McClean
L Mahadevan
Sharad Ramanathan

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Signaling pathways relay information about changes in the external environment so that cells can respond appropriately. How much information a pathway can carry depends on its bandwidth. We designed a microfluidic device to reliably change the environment of single cells over a range of frequencies. Using this device, we measured the bandwidth of the Saccharomyces cerevisiae signaling pathway that responds to high osmolarity. This prototypical pathway, the HOG pathway, is shown to act as a low-pass filter, integrating the signal when it changes rapidly and following it faithfully when it changes more slowly. We study the dependence of the pathway's bandwidth on its architecture. We measure previously unknown bounds on all of the in vivo reaction rates acting in this pathway. We find that the two-component Ssk1 branch of this pathway is capable of fast signal integration, whereas the kinase Ste11 branch is not. Our experimental techniques can be applied to other signaling pathways, allowing the measurement of their in vivo kinetics and the quantification of their information capacity.

Indexed as

Gene Expression RegulationMAP Kinase Signaling SystemGene DeletionGene Expression Regulation, FungalImage Processing, Computer-AssistedInflammationMAP Kinase Kinase KinasesMicrofluidic Analytical TechniquesMicrofluidicsMitogen-Activated Protein KinasesModels, BiologicalPlasmidsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionMAP Kinase Kinase KinasesMitogen-Activated Protein KinasesSaccharomyces cerevisiae ProteinsSte11 protein, S cerevisiae

Identifiers

PMID18480263
PMCPMC2386076

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.