Evidence map›Paper›PMID 18478107›Full record

ArticlePloS one2008

Genome sequence of Brucella abortus vaccine strain S19 compared to virulent strains yields candidate virulence genes.

Oswald R Crasta, Otto Folkerts, Zhangjun Fei, Shrinivasrao P Mane, Clive Evans, Susan Martino-Catt, Betsy Bricker, GongXin Yu, Lei Du, Bruno W Sobral

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 116 citations in OpenAlex.

  1. Review
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  8. Russian collection ofFrontiers in veterinary science · 2023
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  13. Review
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  19. NewIranian journal of biotechnology · 2019
    Article
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Oswald R CrastaVirginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, United States of America. ocrasta@vbi.vt.edu
Otto Folkerts
Zhangjun Fei
Shrinivasrao P Mane
Clive Evans
Susan Martino-Catt
Betsy Bricker
GongXin Yu
Lei Du
Bruno W Sobral
Virginia Tech · USNational Animal Disease Center · US

Funding

PHS HHS HHSN26620040035C
6 · The paper itself

Abstract

The Brucella abortus strain S19, a spontaneously attenuated strain, has been used as a vaccine strain in vaccination of cattle against brucellosis for six decades. Despite many studies, the physiological and molecular mechanisms causing the attenuation are not known. We have applied pyrosequencing technology together with conventional sequencing to rapidly and comprehensively determine the complete genome sequence of the attenuated Brucella abortus vaccine strain S19. The main goal of this study is to identify candidate virulence genes by systematic comparative analysis of the attenuated strain with the published genome sequences of two virulent and closely related strains of B. abortus, 9-941 and 2308. The two S19 chromosomes are 2,122,487 and 1,161,449 bp in length. A total of 3062 genes were identified and annotated. Pairwise and reciprocal genome comparisons resulted in a total of 263 genes that were non-identical between the S19 genome and any of the two virulent strains. Amongst these, 45 genes were consistently different between the attenuated strain and the two virulent strains but were identical amongst the virulent strains, which included only two of the 236 genes that have been implicated as virulence factors in literature. The functional analyses of the differences have revealed a total of 24 genes that may be associated with the loss of virulence in S19. Of particular relevance are four genes with more than 60 bp consistent difference in S19 compared to both the virulent strains, which, in the virulent strains, encode an outer membrane protein and three proteins involved in erythritol uptake or metabolism.

Indexed as

Genome, BacterialAnimalsBacterial VaccinesBrucella abortusCattleChromosomes, BacterialOpen Reading FramesSpecies SpecificityVirulenceBacterial Vaccines

Identifiers

PMID18478107
PMCPMC2364660
OpenAlexW1966864970

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.