Evidence map›Paper›PMID 18472269›Full record

ArticleBioorganic & medicinal chemistry2008

Selection of phage-displayed peptides that bind to a particular ligand-bound antibody.

Fujie Tanaka, Yunfeng Hu, Jori Sutton, Lily Asawapornmongkol, Roberta Fuller, Arthur J Olson, Carlos F Barbas, Richard A Lerner

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Fujie TanakaDepartment of Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA. ftanaka@scripps.edu
Yunfeng Hu
Jori Sutton
Lily Asawapornmongkol
Roberta Fuller
Arthur J Olson
Carlos F Barbas
Richard A Lerner

Funding

Strategies for Selective Covalent Conjugation of Proteins with Small MoleculesR21GM078447 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI TANAKA, FUJIE · 2006 to 2007
$504k
NIGMS NIH HHS R21 GM078447
6 · The paper itself

Abstract

Phage-displayed peptides that selectively bind to aldolase catalytic antibody 93F3 when bound to a particular 1,3-diketone hapten derivative have been developed using designed selection strategies with libraries containing 7-12 randomized amino acid residues. These phage-displayed peptides discriminated the particular 93F3-diketone complex from ligand-free 93F3 and from 93F3 bound to other 1,3-diketone hapten derivatives. By altering the selection procedures, phage-displayed peptides that bind to antibody 93F3 in the absence of 1,3-diketone hapten derivatives have also been developed. With using these phage-displayed peptides, ligand-bound states of the antibody were distinguished from each other. A docking model of one of the peptides bound to the antibody 93F3-diketone complex was created using a sequential divide-and-conquer peptide docking strategy; the model suggests that the peptide interacts with both the antibody and the ligand through a delicate hydrogen bonding network.

Indexed as

Binding Sites, AntibodyAnimalsAntibodies, CatalyticAntibodies, MonoclonalBacteriophage M13CatalaseHumansKetonesLigandsMiceMutant Chimeric ProteinsOligopeptidesPeptide LibraryAntibodies, CatalyticAntibodies, MonoclonalCatalaseKetonesLigandsMutant Chimeric ProteinsOligopeptidesPeptide Library

Identifiers

PMID18472269
PMCPMC2452761

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.