Evidence map›Paper›PMID 18471978›Full record

ArticleMolecular cell2008

Microarray-based genetic screen defines SAW1, a gene required for Rad1/Rad10-dependent processing of recombination intermediates.

Fuyang Li, Junchao Dong, Xuewen Pan, Ji-Hyun Oum, Jef D Boeke, Sang Eun Lee

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
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  5. Biochemistry and biophysics reports · 2021
    Article
  6. Review
  7. Variants of the humanMicrobial cell (Graz, Austria) · 2020
    Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Fuyang LiDepartment of Molecular Medicine and Institute of Biotechnology, University of Texas Health Science Center at San Antonio, 15355 Lambda Drive, San Antonio, TX 78245, USA.
Junchao Dong
Xuewen Pan
Ji-Hyun Oum
Jef D Boeke
Sang Eun Lee
The University of Texas Health Science Center at San Antonio · USHigh Throughput Biology (United States) · USJohns Hopkins University · US

Funding

TCP5: ACTIVE SITE LABELING REAGENT FOR ACETYLTRANSFERASESU54RR020839 · NCRR · JOHNS HOPKINS UNIVERSITY · PI BOEKE, JEF D · 2004 to 2011
$27.4M
YEAST GENETIC INTERACTION MAPR01HG002432 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI BOEKE, JEF D · 2002 to 2008
$11.8M
Mechanisms of Error Prone Repair of DNA BreaksR01GM071011 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEE, SANG EUN · 2004 to 2021
$4.5M
NCRR NIH HHS RR020839NCRR NIH HHS U54 RR020839NHGRI NIH HHS HG02432NHGRI NIH HHS R01 HG002432NIGMS NIH HHS GM071011NIGMS NIH HHS R01 GM071011
6 · The paper itself

Abstract

Elimination of a double-strand break (DSB) flanked by direct repeat sequences is mediated by single-strand annealing (SSA), which relies on a distinct set of gene products involving recombination, mismatch repair, and nucleotide excision repair. Here, we screened for yeast mutants defective in SSA with a plasmid-based SSA assay coupled to a barcode microarray readout. The screen identified Yal027Wp/Saw1 (single-strand annealing weakened 1) and Slx4 besides other known SSA proteins. Saw1 interacts physically with Rad1/Rad10, Msh2/Msh3, and Rad52 proteins, and cells lacking SLX4 or SAW1 accumulate recombination intermediates blocked at the Rad1/Rad10-dependent 3' flap cleavage step. Slx4 and Saw1 also contribute to the integrity of ribosomal DNA arrays. Saw1 mutants that fail to interact with Rad1, but retain interaction with Rad52 and Msh2, are defective in 3' flap removal and SSA repair. Deletion of SAW1 abolished association of Rad1 at SSA intermediates in vivo. We propose that Saw1 targets Rad1/Rad10 to Rad52-coated recombination intermediates.

Indexed as

DNA RepairOligonucleotide Array Sequence AnalysisRecombination, GeneticSaccharomyces cerevisiae ProteinsBase SequenceDNA-Binding ProteinsDNA DamageDNA Repair EnzymesDNA, RibosomalEndonucleasesGene Expression Regulation, FungalMutationMutS Homolog 2 ProteinPlasmidsRad52 DNA Repair and Recombination ProteinSaccharomyces cerevisiaeDNA-Binding ProteinsDNA Repair EnzymesDNA, RibosomalEndonucleasesMSH2 protein, S cerevisiaeMutS Homolog 2 ProteinRAD10 protein, S cerevisiaeRAD1 protein, S cerevisiaeRad52 DNA Repair and Recombination ProteinSaccharomyces cerevisiae ProteinsSingle-Strand Specific DNA and RNA Endonucleases

Identifiers

PMID18471978
PMCPMC2398651
OpenAlexW2091578308

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.