Evidence map›Paper›PMID 18470663›Full record

ArticleJournal of bone and mineral metabolism2008

Microarray analysis of thapsigargin-induced stress to the endoplasmic reticulum of mouse osteoblasts.

Kazunori Hamamura, Yunlong Liu, Hiroki Yokota

Abstract read
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In one paragraph

Article in Journal of bone and mineral metabolism, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kazunori HamamuraDepartment of Biomedical Engineering, Indiana University-Purdue University, Indianapolis, IN 46202, USA.
Yunlong Liu
Hiroki Yokota
Indiana University – Purdue University Indianapolis · US

Funding

Mechanical response of osteoblasts in 3D matrixR01AR050008 · NIAMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI YOKOTA, HIROKI · 2004 to 2007
$829k
NIAMS NIH HHS R01 AR50008
6 · The paper itself

Abstract

Activating transcription factor 4 (ATF4) protein has a dual role in osteoblasts. It functions as a responder to stress to the endoplasmic reticulum (ER) as well as a transcription factor for bone formation. Little is known about molecular pathways that can potentially lead to stress-induced apoptosis or homeostasis of extracellular matrix (ECM) molecules. Based on microarray-derived mRNA expression data for mouse osteoblasts (MC3T3 E1 cells, clone 4), we analyzed the ER-stress responses in the presence of 10 nM Thapsigargin using two computational approaches: "Gene Set Enrichment Analysis (GSEA)" and "Ingenuity Pathways Analysis (IPA)." GSEA presented a strong linkage to an expression pattern observed in the responses to hypoxia, and IPA identified two molecular pathways: ATF4-unlinked connective tissue development and ATF4-linked organ morphology. Real-time polymerase chain reaction (PCR) and Western blot analyses validated eIF2alpha-driven translational regulation as well as ATF4-linked transcriptional activation of transcription factors and growth factors including FOS, FGF-9, and BMP-2. Consistent with the role of p38 MAPK in hypoxia, phosphorylation of p38 MAPK was activated in nonapoptotic osteoblasts under surviving ER stress. Furthermore, the level of phosphorylated PERK was elevated. These results support cross-talk between p38 MAPK and ER kinase, presenting a similarity to the responses to hypoxia as well as a pathway toward connective tissue development and organ morphology.

Indexed as

Oligonucleotide Array Sequence Analysis3T3 CellsActivating Transcription Factor 4AnimalsClone CellseIF-2 KinaseEndoplasmic ReticulumGene Expression ProfilingMiceOsteoblastsOxidative StressThapsigarginUp-RegulationActivating Transcription Factor 4eIF-2 KinaseThapsigargin

Identifiers

PMID18470663
OpenAlexW2152913351

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.