Evidence map›Paper›PMID 18469323›Full record

ArticleJournal of experimental botany2008

A field-grown transgenic tomato line expressing higher levels of polyamines reveals legume cover crop mulch-specific perturbations in fruit phenotype at the levels of metabolite profiles, gene expression, and agronomic characteristics.

Anil Neelam, Tatiana Cassol, Roshni A Mehta, Aref A Abdul-Baki, Anatoli P Sobolev, Ravinder K Goyal, Judith Abbott, Anna L Segre, Avtar K Handa, Autar K Mattoo

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of experimental botany, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 40 citations in OpenAlex.

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  7. An overview of NMR-based metabolomics to identify secondary plant compounds involved in host plant resistance.Phytochemistry reviews : proceedings of the Phytochemical Society of Europe · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Anil NeelamUSDA-ARS, Henry A. Wallace Beltsville Agricultural Research Center, Building 001, Beltsville, MD 20705-2350, USA.
Tatiana Cassol
Roshni A Mehta
Aref A Abdul-Baki
Anatoli P Sobolev
Ravinder K Goyal
Judith Abbott
Anna L Segre
Avtar K Handa
Autar K Mattoo
Beltsville Agricultural Research Center · USIstituto di Metodologie Chimiche · ITPurdue University West Lafayette · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic modification of crop plants to introduce desirable traits such as nutritional enhancement, disease and pest resistance, and enhanced crop productivity is increasingly seen as a promising technology for sustainable agriculture and boosting food production in the world. Independently, cultural practices that utilize alternative agriculture strategies including organic cultivation subscribe to sustainable agriculture by limiting chemical usage and reduced tillage. How the two together affect fruit metabolism or plant growth in the field or whether they are compatible has not yet been tested. Fruit-specific yeast S-adenosylmethionine decarboxylase (ySAMdc) line 579HO, and a control line 556AZ were grown in leguminous hairy vetch (Vicia villosa Roth) (HV) mulch and conventional black polyethylene (BP) mulch, and their fruit analysed. Significant genotypexmulch-dependent interactions on fruit phenotype were exemplified by differential profiles of 20 fruit metabolites such as amino acids, sugars, and organic acids. Expression patterns of the ySAMdc transgene, and tomato SAMdc, E8, PEPC, and ICDHc genes were compared between the two lines as a function of growth on either BP or HV mulch. HV mulch significantly stimulated the accumulation of asparagine, glutamate, glutamine, choline, and citrate concomitant with a decrease in glucose in the 556AZ fruits during ripening as compared to BP. It enables a metabolic system in tomato somewhat akin to the one in higher polyamine-accumulating transgenic fruit that have higher phytonutrient content. Finally, synergism was found between HV mulch and transgenic tomato in up-regulating N:C indicator genes PEPC and ICDHc in the fruit.

Indexed as

Gene Expression Regulation, PlantAdenosylmethionine DecarboxylaseFruitFungal ProteinsGenotypeIsocitrate DehydrogenasePhenotypePhosphoenolpyruvate CarboxylasePlant ProteinsPlants, Genetically ModifiedPolyaminesSoilSolanum lycopersicumTranscription, GeneticViciaYeastsAdenosylmethionine DecarboxylaseFungal ProteinsIsocitrate Dehydrogenaseisocitrate dehydrogenase (NADP+)Phosphoenolpyruvate CarboxylasePlant ProteinsPolyaminesSoil

Identifiers

PMID18469323
PMCPMC2423649
OpenAlexW2112917098

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.