Evidence map›Paper›PMID 18469094›Full record

ArticleJournal of bacteriology2008

The putative hybrid sensor kinase SypF coordinates biofilm formation in Vibrio fischeri by acting upstream of two response regulators, SypG and VpsR.

Cynthia L Darnell, Elizabeth A Hussa, Karen L Visick

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 67 citations in OpenAlex.

  1. A single point mutation is sufficient to driveJournal of bacteriology · 2025
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  4. Host-Associated Biofilms:Microorganisms · 2025
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  8. Journal of bacteriology · 2024
    Review
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  15. Article
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  17. Article
  18. Vibrio fischeri Biofilm Formation Prevented by a Trio of Regulators.Applied and environmental microbiology · 2018
    Article
  19. Article
  20. Tools for Rapid Genetic Engineering of Vibrio fischeri.Applied and environmental microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Cynthia L DarnellDepartment of Microbiology and Immunology, Loyola University Chicago, Maywood, IL 60153, USA.
Elizabeth A Hussa
Karen L Visick
Loyola University Medical Center · US

Funding

REQUIREMENTS FOR BACTERIAL COLONIZATION OF ANIMAL TISSUER01GM059690 · NIGMS · LOYOLA UNIVERSITY CHICAGO · PI VISICK, KAREN L · 2000 to 2013
$3.4M
NIGMS NIH HHS GM59690NIGMS NIH HHS R01 GM059690
6 · The paper itself

Abstract

Colonization of the Hawaiian squid Euprymna scolopes by the marine bacterium Vibrio fischeri requires the symbiosis polysaccharide (syp) gene cluster, which contributes to symbiotic initiation by promoting biofilm formation on the surface of the symbiotic organ. We previously described roles for the syp-encoded response regulator SypG and an unlinked gene encoding the sensor kinase RscS in controlling syp transcription and inducing syp-dependent cell-cell aggregation phenotypes. Here, we report the involvement of an additional syp-encoded regulator, the putative sensor kinase SypF, in promoting biofilm formation. Through the isolation of an increased activity allele, sypF1, we determined that SypF can function to induce syp transcription as well as a variety of biofilm phenotypes, including wrinkled colony formation, adherence to glass, and pellicle formation. SypF1-mediated transcription of the syp cluster was entirely dependent on SypG. However, the biofilm phenotypes were reduced, not eliminated, in the sypG mutant. These phenotypes were also reduced in a mutant deleted for sypE, another syp-encoded response regulator. However, SypF1 still induced phenotypes in a sypG sypE double mutant, suggesting that SypF1 might activate another regulator(s). Our subsequent work revealed that the residual SypF1-induced biofilm formation depended on VpsR, a putative response regulator, and cellulose biosynthesis. These data support a model in which a network of regulators and at least two polysaccharide loci contribute to biofilm formation in V. fischeri.

Indexed as

Aliivibrio fischeriAnimalsBacterial AdhesionBacterial ProteinsBiofilmsDecapodiformesGene DeletionGene Expression Regulation, BacterialGene OrderMultigene FamilyMutationProtein BindingProtein KinasesTranscription FactorsBacterial ProteinsProtein KinasesTranscription Factors

Identifiers

PMID18469094
PMCPMC2447025
OpenAlexW2161057282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.