Evidence map›Paper›PMID 18465198›Full record

ArticlePlant molecular biology2008

The VLCFA elongase gene family in Arabidopsis thaliana: phylogenetic analysis, 3D modelling and expression profiling.

Jérôme Joubès, Sylvain Raffaele, Brice Bourdenx, Christel Garcia, Jeanny Laroche-Traineau, Patrick Moreau, Frédéric Domergue, René Lessire

Abstract read
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Article in Plant molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 169 papers.

0numbers the graph read from it
0cells of the map it votes in
169citing papers in PubMed
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

169 citing papers in PubMed, 368 citations in OpenAlex.

  1. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2026
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109 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jérôme JoubèsLaboratoire de Biogenèse Membranaire, Université Victor Ségalen Bordeaux 2, CNRS, UMR5200, 146 rue Léo Saignat, Case 92, 33076 Bordeaux Cedex, France. jjoubes@biomemb.u-bordeaux2.fr
Sylvain Raffaele
Brice Bourdenx
Christel Garcia
Jeanny Laroche-Traineau
Patrick Moreau
Frédéric Domergue
René Lessire
Centre National de la Recherche Scientifique · FRLaboratoire de Biogenèse Membranaire · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As precursors of wax compounds, very long chain fatty acids participate in the limitation of non-stomatal water loss and the prevention of pathogen attacks. They also serve as energy storage in seeds and as membrane building blocks. Their biosynthesis is catalyzed by the acyl-CoA elongase, a membrane-bound enzymatic complex containing four distinct enzymes (KCS, KCR, HCD and ECR). Twenty-one 3-ketoacyl-CoA synthase (KCS) genes have been identified in Arabidopsis thaliana genome. In this paper we present an overview of the acyl-CoA elongase genes in Arabidopsis focusing on the entire KCS family. We show that the KCS family is made up of 8 distinct subclasses, according to their phylogeny, duplication history, genomic organization, protein topology and 3D modelling. The analysis of the subcellular localization in tobacco cells of the different subunits of the acyl-CoA elongase shows that all these proteins are localized in the endoplasmic reticulum demonstrating that VLCFA production occurs in this compartment. The expression patterns in Arabidopsis of the acyl-CoA elongase genes suggest several levels of regulations at the tissular or organ level but also under stress conditions suggesting a complex organization of this multigenic family.

Indexed as

Gene Expression ProfilingArabidopsisArabidopsis ProteinsCoenzyme A LigasesEndoplasmic ReticulumGenes, PlantPhylogenyProtein ConformationReverse Transcriptase Polymerase Chain ReactionTranscription, GeneticArabidopsis ProteinsCoenzyme A Ligases

Identifiers

PMID18465198
OpenAlexW2017292801

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.