ArticleNucleic acids research2008
Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data.
Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
13 citing papers in PubMed.
- OMiCC: An expanded and enhanced platform for meta-analysis of public gene expression data.STAR protocols · 2022Article
- ARGEOS: A New Bioinformatic Tool for Detailed Systematics Search in GEO and ArrayExpress.Biology · 2021Article
- First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_.BMC bioinformatics · 2019Article
- Inhibition of mitochondrial 2-oxoglutarate dehydrogenase impairs viability of cancer cells in a cell-specific metabolism-dependent manner.Oncotarget · 2016Article
- GEE: An Informatics Tool for Gene Expression Data Explore.Healthcare informatics research · 2016Article
- ExAtlas: An interactive online tool for meta-analysis of gene expression data.Journal of bioinformatics and computational biology · 2015Article
- NeuroTransDB: highly curated and structured transcriptomic metadata for neurodegenerative diseases.Database : the journal of biological databases and curation · 2015Article
- Comprehensive literature review and statistical considerations for microarray meta-analysis.Nucleic acids research · 2012Review
- Exploring the transcriptome of ciliated cells using in silico dissection of human tissues.PloS one · 2012Article
- PathEx: a novel multi factors based datasets selector web tool.BMC bioinformatics · 2010Article
- Microarray meta-analysis database (M(2)DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database.BMC bioinformatics · 2010Article
- A-MADMAN: annotation-based microarray data meta-analysis tool.BMC bioinformatics · 2009Article
- Convergence of biomarkers, bioinformatics and nanotechnology for individualized cancer treatment.Trends in biotechnology · 2009Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The major public microarray repositories Gene Expression Omnibus and ArrayExpress are growing rapidly. This enables meta-analysis studies, in which expression data from multiple individual studies are combined. To facilitate these types of studies, we developed Microarray Retriever for searching and retrieval of data from GEO and ArrayExpress. The tool allows access to the two repositories simultaneously, to search in the repositories using complex queries, to retrieve microarray data for published articles and to download data in one structured archive. The tool is available on the web at: http://www.lgtc.nl/MaRe/
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.