Evidence map›Paper›PMID 18462166›Full record

ArticleThe Journal of infectious diseases2008

Two quantitative trait loci influence whipworm (Trichuris trichiura) infection in a Nepalese population.

Sarah Williams-Blangero, John L Vandeberg, Janardan Subedi, Bharat Jha, Tom D Dyer, John Blangero

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Whipworm and roundworm infections.Nature reviews. Disease primers · 2020
    Review
  6. Article
  7. Article
  8. Host genetics and population structure effects on parasitic disease.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012
    Article
  9. Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Sarah Williams-BlangeroDepartment of Genetics, Southwest Foundation for Biomedical Research, San Antonio, Texas 78245-0549, USA. sarah@sfbrgenetics.org
John L Vandeberg
Janardan Subedi
Bharat Jha
Tom D Dyer
John Blangero
Texas Biomedical Research Institute · USMiami University · USTribhuvan University · NP

Funding

Quantitative Trait Locus Mapping in Human PedigreesR37MH059490 · NIMH · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2001 to 2010
$6.8M
A GENOME SCAN FOR SUSCEPTIBILITY TO HELMINTHIC INFECTIONR01AI044406 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI WILLIAMS-BLANGERO, SARAH A. · 2000 to 2009
$5.1M
GENETICS OF SUSCEPTIBILITY TO HELMINTHIC INFECTIONR01AI037091 · NIAID · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI WILLIAMS-BLANGERO, SARAH A. · 1995 to 2005
$3.3M
EXTRAMULAR RESEARCH FACILITIES CONSTRUCTIONC06RR017515 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI SHADE, ROBERT E · 2003 to 2003
$3.1M
QUANTITATIVE TRAIT LOCUS MAPPING IN HUMAN PEDIGREESR01MH059490 · NIMH · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI BLANGERO, JOHN · 1998 to 2000
$426k
MOLECULAR AND BIOCHEMICAL GENETICS LABORATORY RENOVATIONC06RR013556 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI SHADE, ROBERT E · 1998 to 1998
–
A GENOME SCAN FOR SUSCEPTIBILITY TO HELMINTHIC INFECTIONR21AI044406 · NIAID · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI WILLIAMS-BLANGERO, SARAH A. · 1999 to 1999
–
NCRR NIH HHS C06 RR013556NCRR NIH HHS C06 RR017515NIAID NIH HHS AI37091NIAID NIH HHS AI44406NIAID NIH HHS R01 AI037091NIAID NIH HHS R21 AI044406NIMH NIH HHS MH59490NIMH NIH HHS R01 MH059490NIMH NIH HHS R37 MH059490
6 · The paper itself

Abstract

backgroundWhipworm (Trichuris trichiura) infection is a soil-transmitted helminth infection that affects >1 billion people. It is a serious public health problem in many developing countries and can result in deficits in growth and cognitive development. In a follow-up study of significant heritability for whipworm infection, we conducted the first genome scan for quantitative trait loci (QTL) influencing the heritability of susceptibility to this important parasitic disease.

methodsWhipworm egg counts were determined for 1,253 members of the Jirel population of eastern Nepal. All individuals in the study sample belonged to a single pedigree including >26,000 pairs of relatives that are informative for genetic analysis.

resultsLinkage analysis of genome scan data generated for the pedigree provided unambiguous evidence for 2 QTL influencing susceptibility to whipworm infection, one located on chromosome 9 (logarithm of the odds ratio [LOD] score, 3.35; genomewide P = .0138) and the other located on chromosome 18 (LOD score, 3.29; genomewide P = .0159). There was also suggestive evidence that 2 loci located on chromosomes 12 and 13 influenced whipworm infection.

conclusionThe results of this first genome scan for T. trichiura egg counts provides new information on the determinants of genetic predisposition to whipworm infection.

Indexed as

Quantitative Trait LociAdolescentAdultAgedAged, 80 and overAnimalsChildChild, PreschoolChromosome MappingFecesFemaleGastrointestinal DiseasesGenetic Predisposition to DiseaseGenome, HumanHumansLod Score

Identifiers

PMID18462166
PMCPMC4122289
OpenAlexW2144263689

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.