Evidence map›Paper›PMID 18462070›Full record

ArticleDNA and cell biology2008

Distribution of genes for virulence and ecological fitness among diverse Vibrio cholerae population in a cholera endemic area: tracking the evolution of pathogenic strains.

M Hasibur Rahman, Kuntal Biswas, M Anwar Hossain, R Bradley Sack, John J Mekalanos, Shah M Faruque

Open access · greenAbstract read
In one paragraph

Article in DNA and cell biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
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  3. Review
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  7. Virulence, Resistance, and Genomic Fingerprint Traits ofMicrobial drug resistance (Larchmont, N.Y.) · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Environmental and Clinical Strains ofFrontiers in microbiology · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Riverbed Sediments as Reservoirs of MultipleJournal of environmental and public health · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

M Hasibur RahmanMolecular Genetics Laboratory, International Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Kuntal Biswas
M Anwar Hossain
R Bradley Sack
John J Mekalanos
Shah M Faruque
International Centre for Diarrhoeal Disease Research · BDHarvard University · USJohns Hopkins University · USKhulna University · BDUniversity of Dhaka · BD

Funding

EPIDEMIOLOGY &ECOLOGY OF VIBRIO CHOLERAE IN BANGLADESHR01AI039129 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SACK, DAVID A · 1996 to 2014
$15.2M
Phages and Genomic Variation in Vibrio Cholerae EvolutionR01GM068851 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MEKALANOS, JOHN JOSEPH · 2003 to 2015
$3.9M
Genetic and Ecological Factors in Transmissibility and Epidemic Cycle of CholeraR01AI070963 · NIAID · HARVARD MEDICAL SCHOOL · PI MEKALANOS, JOHN JOSEPH · 2007 to 2010
$1.3M
NIAID NIH HHS AI070963-01A1NIAID NIH HHS AI 39129NIGMS NIH HHS 2R01-GM068851-5
6 · The paper itself

Abstract

The pathogenic strains of Vibrio cholerae that cause acute enteric infections in humans are derived from environmental nonpathogenic strains. To track the evolution of pathogenic V. cholerae and identify potential precursors of new pathogenic strains, we analyzed 324 environmental or clinical V. cholerae isolates for the presence of diverse genes involved in virulence or ecological fitness. Of 251 environmental non-O1, non-O139 strains tested, 10 (3.9%) carried the toxin coregulated pilus (TCP) pathogenicity island encoding TCPs, and the CTX prophage encoding cholera toxin, whereas another 10 isolates carried the TCP island alone, and were susceptible to transduction with CTX phage. Most V. cholerae O1 and O139 strains carried these two major virulence determinants, as well as the Vibrio seventh pandemic islands (VSP-1 and VSP-2), whereas 23 (9.1%) non-O1, non-O139 strains carried several VSP island genes, but none carried a complete VSP island. Conversely, 30 (11.9%) non-O1, non-O139 strains carried type III secretion system (TTSS) genes, but none of 63 V. cholerae O1 or O139 strains tested were positive for TTSS. Thus, the distribution of major virulence genes in the non-O1, non-O139 serogroups of V. cholerae is largely different from that of the O1 or O139 serogroups. However, the prevalence of putative accessory virulence genes (mshA, hlyA, and RTX) was similar in all strains, with the mshA being most prevalent (98.8%) followed by RTX genes (96.2%) and hlyA (94.6%), supporting more recent assumptions that these genes imparts increased environmental fitness. Since all pathogenic strains retain these genes, the epidemiological success of the strains presumably depends on their environmental persistence in addition to the ability to produce major virulence factors. Potential precursors of new pathogenic strains would thus require to assemble a combination of genes for both ecological fitness and virulence to attain epidemiological predominance.

Indexed as

EcosystemEvolution, MolecularAnimalsAnimals, NewbornAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsBacteriophagesCholeraEndemic DiseasesGene FrequencyGenomic IslandsHost-Pathogen InteractionsHumansMiceModels, BiologicalAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsVirulence FactorsVsp protein, bacterial

Identifiers

PMID18462070
PMCPMC2980768
OpenAlexW1986020144

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.