Evidence map›Paper›PMID 18460606›Full record

ArticleThe Plant cell2008

Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis.

Jacob Krüger Jensen, Susanne Oxenbøll Sørensen, Jesper Harholt, Naomi Geshi, Yumiko Sakuragi, Isabel Møller, Joris Zandleven, Adriana J Bernal, Niels Bjerg Jensen, Charlotte Sørensen and 4 more

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Insights into pectinCell surface (Amsterdam, Netherlands) · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jacob Krüger JensenLaboratory of Molecular Plant Biology, Department of Plant Biology, Faculty of Life Sciences, University of Copenhagen, DK-1871 Frederiksberg C, Denmark.
Susanne Oxenbøll Sørensen
Jesper Harholt
Naomi Geshi
Yumiko Sakuragi
Isabel Møller
Joris Zandleven
Adriana J Bernal
Niels Bjerg Jensen
Charlotte Sørensen
Markus Pauly
Gerrit Beldman
William G T Willats
Henrik Vibe Scheller

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xylogalacturonan (XGA) is a class of pectic polysaccharide found in plant cell walls. The Arabidopsis thaliana locus At5g33290 encodes a predicted Type II membrane protein, and insertion mutants of the At5g33290 locus had decreased cell wall xylose. Immunological studies, enzymatic extraction of polysaccharides, monosaccharide linkage analysis, and oligosaccharide mass profiling were employed to identify the affected cell wall polymer. Pectic XGA was reduced to much lower levels in mutant than in wild-type leaves, indicating a role of At5g33290 in XGA biosynthesis. The mutated gene was designated xylogalacturonan deficient1 (xgd1). Transformation of the xgd1-1 mutant with the wild-type gene restored XGA to wild-type levels. XGD1 protein heterologously expressed in Nicotiana benthamiana catalyzed the transfer of xylose from UDP-xylose onto oligogalacturonides and endogenous acceptors. The products formed could be hydrolyzed with an XGA-specific hydrolase. These results confirm that the XGD1 protein is a XGA xylosyltransferase. The protein was shown by expression of a fluorescent fusion protein in N. benthamiana to be localized in the Golgi vesicles as expected for a glycosyltransferase involved in pectin biosynthesis.

Indexed as

ArabidopsisArabidopsis ProteinsCell WallDNA, BacterialGenetic Complementation TestGolgi ApparatusHexuronic AcidsMicroscopy, FluorescenceModels, GeneticMolecular Sequence DataNicotianaPectinsPentosyltransferasesPlants, Genetically ModifiedSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationUDP Xylose-Protein XylosyltransferaseArabidopsis ProteinsDNA, BacterialHexuronic AcidsPectinsPentosyltransferasesT-DNAUDP Xylose-Protein XylosyltransferasexylogalacturonanXylose

Identifiers

PMID18460606
PMCPMC2438468
OpenAlexW322007072

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.