Evidence map›Paper›PMID 18460447›Full record

ArticleMolecular biology and evolution2008

Long-term balancing selection at the west nile virus resistance gene, Oas1b, maintains transspecific polymorphisms in the house mouse.

William Ferguson, Shira Dvora, Juliana Gallo, Annie Orth, Stéphane Boissinot

Open access · greenAbstract readComparative Study
In one paragraph

Article in Molecular biology and evolution, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Intracellular Antiviral Immunity.Advances in virus research · 2018
    Review
  5. Article
  6. Functional evolution of the OAS1 viral sensor: Insights from old world primates.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2016
    Article
  7. Article
  8. Interspecific introgressive origin of genomic diversity in the house mouse.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Transspecies dimorphic allelic lineages of the proteasome subunit beta-type 8 gene (PSMB8) in the teleost genus Oryzias.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Introduction. Ecological immunology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

William FergusonDepartment of Biology, Queens College, The City University of New York, USA.
Shira Dvora
Juliana Gallo
Annie Orth
Stéphane Boissinot
City University of New York · USThe Graduate Center, CUNY · USUniversité de Montpellier · FR

Funding

Molecular Evolution of flavivirus-resistance in miceR15AI058968 · NIAID · QUEENS COLLEGE · PI BOISSINOT, STEPHANE · 2005 to 2005
$231k
NIAID NIH HHS AI058968-01A1NIAID NIH HHS R15 AI058968
6 · The paper itself

Abstract

Oligoadenylate synthetases (OASs) are interferon-inducible enzymes that participate in the first line of defense against a wide range of viral infection. Recent studies have determined that Oas1b, a member of the OAS gene family in the house mouse (Mus musculus), provides specific protection against flavivirus infection (e.g., West Nile virus, dengue fever virus, and yellow fever virus). We characterized the nucleotide sequence variation in coding and noncoding regions of the Oas1b gene for a large number of wild-derived strains of M. musculus and related species. Our sequence analyses determined that this gene is one of the most polymorphic genes ever described in any mammal. The level of variation in noncoding regions of Oas1b is an order of magnitude higher than the level reported for other regions of the mouse genome and is significantly different from the level of intraspecific variation expected under neutrality. Furthermore, a phylogenetic analysis of intronic sequences demonstrated that Oas1b alleles are ancient and that their divergence predates several speciation events, resulting in transspecific polymorphisms. The amino acid sequence of Oas1b is also extremely variable, with 1 out of 7 amino acid positions being polymorphic within M. musculus. Oas1b alleles are comparatively more divergent at synonymous positions than most autosomal genes and the ratio of nonsynonymous to synonymous substitution is remarkably high, suggesting that positive selection has been acting on Oas1b. The ancestry of Oas1b polymorphisms and the high level of amino acid polymorphisms strongly suggest that the allelic variation at Oas1b has been maintained in mouse populations by long-term balancing selection.

Indexed as

Evolution, MolecularPolymorphism, GeneticSelection, Genetic2',5'-Oligoadenylate SynthetaseAmino Acid SequenceAnimalsBase SequenceDNA PrimersLikelihood FunctionsMiceModels, GeneticMolecular Sequence DataSequence Analysis, DNASpecies Specificity2',5'-Oligoadenylate SynthetaseDNA PrimersOas1b protein, mouse

Identifiers

PMID18460447
PMCPMC2727379
OpenAlexW2118307181

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.