Evidence map›Paper›PMID 18459711›Full record

ArticleJournal of the American Association for Laboratory Animal Science : JAALAS2008

Multiplex microsatellite marker panels for genetic monitoring of common rat strains.

Elizabeth C Bryda, Lela K Riley

Abstract read
In one paragraph

Article in Journal of the American Association for Laboratory Animal Science : JAALAS, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. The case for genetic monitoring of mice and rats used in biomedical research.Mammalian genome : official journal of the International Mammalian Genome Society · 2013
    Review
  11. Development and application of a whole-genome simple sequence repeat panel for high-throughput genotyping in soybean.DNA research : an international journal for rapid publication of reports on genes and genomes · 2011
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Elizabeth C BrydaDepartment of Veterinary Pathobiology, Research Animal Diagnostic Laboratory, College of Veterinary Medicine, University of Missouri, Columbia, MO, USA. brydae@missouri.edu
Lela K Riley

Funding

RAT RESOURCE &RESEARCH CENTER: MODELS OF HUMAN DISEASEP40RR016939 · NCRR · UNIVERSITY OF MISSOURI-COLUMBIA · PI BRYDA, ELIZABETH C · 2001 to 2011
$14.7M
NCRR NIH HHS P40 RR016939NCRR NIH HHS P40 RR16939
6 · The paper itself

Abstract

Because microsatellite markers have a high degree of genetic variability, they are an effective tool for genetic monitoring. We have developed a genotyping panel containing 87 microsatellite markers that are polymorphic among commonly used inbred rat strains, including ACI, Fischer 344, Lewis, Brown Norway, Wistar-Furth, and Wistar-Kyoto. The markers are located at approximately 15- to 20-cM intervals along each of the 20 autosomes. By using fluorescently labeled primers and multiplex PCR analysis, the entire genome can be assayed with only 8 reactions. The resulting amplicons from these reactions can be distinguished from one another by both their size and the fluorescent dye associated with them. Amplicons are analyzed and allele sizes are determined by using automated capillary-based instrumentation. These multiplex panels provide a cost-effective and rapid method for genetic monitoring for applications ranging from assessing genetic contamination in a rat colony to moving mutations from one genetic background to another by using a speed congenic approach.

Indexed as

Polymorphism, Single NucleotideAnimalsGenetic MarkersGenetic TestingGenomicsGenotypeMicrosatellite RepeatsRatsRats, Inbred StrainsGenetic Markers

Identifiers

PMID18459711
PMCPMC2654014

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.