Evidence map›Paper›PMID 18457945›Full record

ArticleBiosensors & bioelectronics2008

Giant magnetoresistive biochip for DNA detection and HPV genotyping.

Liang Xu, Heng Yu, Michael S Akhras, Shu-Jen Han, Sebastian Osterfeld, Robert L White, Nader Pourmand, Shan X Wang

Open access · greenAbstract read
In one paragraph

Article in Biosensors & bioelectronics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 159 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Daily Fungal Cell-Free DNA Testing to Assess Clinical Status duringJournal of fungi (Basel, Switzerland) · 2024
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Giant Magnetoresistance Biosensors in Biomedical Applications.ACS applied materials & interfaces · 2022
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Liang XuDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305-4045, USA. lxuwind@stanford.edu
Heng Yu
Michael S Akhras
Shu-Jen Han
Sebastian Osterfeld
Robert L White
Nader Pourmand
Shan X Wang
Stanford University · USUniversity of California, Santa Cruz · US

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE, HOWE, ROGER THOMAS · 1990 to 2016
$120.9M
Stanford Nanocharacterization LaboratoryU54CA119367 · NCI · STANFORD UNIVERSITY · PI GAMBHIR, SANJIV S · 2006 to 2010
$19.8M
NCI NIH HHS 1U54CA119367-01NCI NIH HHS U54 CA119367NHGRI NIH HHS P01 HG000205NHGRI NIH HHS P01-HG000205
6 · The paper itself

Abstract

A giant magnetoresistive (GMR) biochip based on spin valve sensor array and magnetic nanoparticle labels was developed for inexpensive, sensitive and reliable DNA detection. The DNA targets detected in this experiment were PCR products amplified from Human Papillomavirus (HPV) plasmids. The concentrations of the target DNA after PCR were around 10 nM in most cases, but concentrations of 10 pM were also detectable, which is demonstrated by experiments with synthetic DNA samples. A mild but highly specific surface chemistry was used for probe oligonucleotide immobilization. Double modulation technique was used for signal detection in order to reduce the 1/f noise in the sensor. Twelve assays were performed with an accuracy of approximately 90%. Magnetic signals were consistent with particle coverage data measured with Scanning Electron Microscopy (SEM). More recent research on microfluidics showed the potential of reducing the assay time below one hour. This is the first demonstration of magnetic DNA detection using plasmid-derived samples. This study provides a direct proof that GMR sensors can be used for biomedical applications.

Indexed as

MagneticsBiosensing TechniquesDNA, ViralGenotypeOligonucleotide Array Sequence AnalysisPapillomaviridaeSensitivity and SpecificityDNA, Viral

Identifiers

PMID18457945
PMCPMC2573902
OpenAlexW2089037091

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.