Evidence map›Paper›PMID 18456815›Full record

ArticleJournal of bacteriology2008

Temperature sensitivity and cell division defects in an Escherichia coli strain with mutations in yghB and yqjA, encoding related and conserved inner membrane proteins.

Kandi Thompkins, Ballari Chattopadhyay, Ying Xiao, Margaret C Henk, William T Doerrler

Abstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Microbiology spectrum · 2024
    Article
  6. Article
  7. The DedA superfamily member PetA is required for the transbilayer distribution of phosphatidylethanolamine in bacterial membranes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Gene Networks Underlying the Resistance ofFrontiers in immunology · 2020
    Article
  16. AFrontiers in microbiology · 2020
    Article
  17. A DedA Family Membrane Protein Is Required forFrontiers in microbiology · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kandi ThompkinsDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Ballari Chattopadhyay
Ying Xiao
Margaret C Henk
William T Doerrler

Funding

BIOSYNTHESIS AND FUNCTION OF LIPOPOLYSACCHARIDESR01GM051310 · NIGMS · DUKE UNIVERSITY · PI ZHOU, PEI · 1994 to 2013
$8.1M
THE ROLE OF MSBA IN LPS SECRETION BY E. COLIF32AI010613 · NIAID · DUKE UNIVERSITY · PI DOERRLER, WILLIAM T · 2000 to 2003
$125k
NIAID NIH HHS 1 F32 AI-10613-01NIAID NIH HHS F32 AI010613NIGMS NIH HHS GM-51310NIGMS NIH HHS R01 GM051310
6 · The paper itself

Abstract

Ludox density gradients were used to enrich for Escherichia coli mutants with conditional growth defects and alterations in membrane composition. A temperature-sensitive mutant named Lud135 was isolated with mutations in two related, nonessential genes: yghB and yqjA. yghB harbors a single missense mutation (G203D) and yqjA contains a nonsense mutation (W92TGA) in Lud135. Both mutations are required for the temperature-sensitive phenotype: targeted deletion of both genes in a wild-type background results in a strain with a similar phenotype and expression of either gene from a plasmid restores growth at elevated temperatures. The mutant has altered membrane phospholipid levels, with elevated levels of acidic phospholipids, when grown under permissive conditions. Growth of Lud135 under nonpermissive conditions is restored by the presence of millimolar concentrations of divalent cations Ca(2+), Ba(2+), Sr(2+), or Mg(2+) or 300 to 500 mM NaCl but not 400 mM sucrose. Microscopic analysis of Lud135 demonstrates a dramatic defect at a late stage of cell division when cells are grown under permissive conditions. yghB and yqjA belong to the conserved and widely distributed dedA gene family, for which no function has been reported. The two open reading frames encode predicted polytopic inner membrane proteins with 61% amino acid identity. It is likely that YghB and YqjA play redundant but critical roles in membrane biology that are essential for completion of cell division in E. coli.

Indexed as

MutationTemperatureAmino Acid SequenceCations, DivalentCell DivisionChromatography, Thin LayerCodon, NonsenseEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialMembrane ProteinsMicroscopy, Electron, ScanningMicroscopy, Electron, TransmissionMicroscopy, InterferenceMolecular Sequence DataMutation, MissenseCations, DivalentCodon, NonsenseEscherichia coli ProteinsMembrane ProteinsPhospholipidsSodium ChlorideSucroseYghB protein, E coliYqjA protein, E coli

Identifiers

PMID18456815
PMCPMC2446817

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.