Evidence map›Paper›PMID 18453567›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2008

HIV-induced changes in T cell signaling pathways.

Marc Schweneker, David Favre, Jeffrey N Martin, Steven G Deeks, Joseph M McCune

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 44 citations in OpenAlex.

  1. Trial
  2. Perturbed T cell IL-7 receptor signaling in chronic Chagas disease.Journal of immunology (Baltimore, Md. : 1950) · 2015
    Trial
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. CD8Frontiers in immunology · 2019
    Review
  13. Article
  14. Review
  15. Article
  16. Concomitant evaluation of PMA+ionomycin-induced kinase phosphorylation and cytokine production in T cell subsets by flow cytometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2014
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Marc SchwenekerDivision of Experimental Medicine, University of California, San Francisco, CA 94110, USA.
David Favre
Jeffrey N Martin
Steven G Deeks
Joseph M McCune
University of California, San Francisco · USSan Francisco General Hospital · US

Funding

UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
WELFARE REFORM AND THE PERINATAL HEALTH OF IMMIGRANTSM01RR000083 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$21.1M
HIV EFFECTS ON THE CENTRAL HEMATOLYMPHOID SYSTEMR37AI040312 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCCUNE, JOSEPH M · 2000 to 2010
$5.0M
UCSF-GIVI CENTER FOR AIDS RESEARCHP30MH059037 · NIMH · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI FEINBERG, MARK A · 1998 to 2001
$4.9M
NIH Director's Pioneer Award (RMI)DP1OD000329 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCCUNE, JOSEPH M · 2004 to 2008
$4.2M
FLOW CYTOMETRY STUDY OF T CELL RESPONSES TO HIV VACCINESR01AI047062 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCCUNE, JOSEPH M · 2000 to 2007
$3.6M
Immunologic Control of Drug-resistant HIV-1R01AI052745 · NIAID · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2002 to 2005
$2.0M
Preventing the Establishment of Enfuvirtide-resistance in the Latent ReservoirK24AI069994 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2007 to 2016
$1.5M
HIV EFFECTS ON THE CENTRAL HEMATOLYMPHOID SYSTEM IN VIVOR01AI040312 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI MCCUNE, JOSEPH M · 1996 to 1999
–
NCRR NIH HHS M01 RR000083NCRR NIH HHS M01 RR 00083NCRR NIH HHS UL1 RR 024131NCRR NIH HHS UL1 RR024131NIAID NIH HHS AI 47062NIAID NIH HHS AI 52745NIAID NIH HHS K24 AI069994NIAID NIH HHS K24 AI 69994NIAID NIH HHS P30 AI027763NIAID NIH HHS P30 AI 27763NIAID NIH HHS R01 AI040312NIAID NIH HHS R01 AI047062NIAID NIH HHS R01 AI052745NIAID NIH HHS R01 AI 40312NIAID NIH HHS R37 AI040312NIH HHS DP1 OD000329NIH HHS DPI OD 00329NIMH NIH HHS P30 MH 59037
6 · The paper itself

Abstract

Infection with HIV usually results in chronic activation of the immune system, with profound quantitative and qualitative changes in the T cell compartment. To better understand the mechanistic basis for T cell dysfunction and to discern whether such mechanisms are reversed after effective antiviral treatment, we analyzed changes in signaling pathways of human CD4(+) and CD8(+) T cells from 57 HIV-infected subjects in varying stages of disease progression and treatment, including long-term nonprogressors, progressors, and chronically infected subjects provided effective antiretroviral therapy (responders). A previously described PhosFlow method was adapted and optimized so that protein phosphorylation could be visualized in phenotypically defined subpopulations of CD4(+) and CD8(+) T cells (naive, memory, and effector) by flow cytometry. T cell signaling induced by TCR cross-linking, IL-2, or PMA/ionomycin was found to be blunted within all T cell subpopulations in those with progressive HIV disease compared with long-term nonprogressors and responders. Although alterations in cellular signaling correlated with levels of basal phosphorylation, viral load, and/or expression of programmed death-1, it was the level of basal phosphorylation that appeared to be the factor most dominantly associated with impaired signaling. Notably, provision of effective antiretroviral therapy was associated with a normalization of both basal phosphorylation levels and T cell signaling. These data, in aggregate, suggest that generalized dysfunction of the T cell compartment during progressive HIV disease may be in part dependent upon an increased basal level of phosphorylation, which itself may be due to the heightened state of immune activation found in advanced disease.

Indexed as

Antigens, CDAnti-Retroviral AgentsCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCross-Linking ReagentsDisease ProgressionFemaleFlow CytometryHIV InfectionsHIV Long-Term SurvivorsHumansMalePhosphorylationRNA, ViralSignal TransductionT-LymphocytesAntigens, CDAnti-Retroviral AgentsCross-Linking ReagentsRNA, Viral

Identifiers

PMID18453567
PMCPMC2648824
OpenAlexW1494391045

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.