ArticleJournal of experimental botany2008
Rice-arsenate interactions in hydroponics: whole genome transcriptional analysis.
Article in Journal of experimental botany, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
58 citing papers in PubMed, 220 citations in OpenAlex.
- OsPIP2;1 impacts root hydraulic conductance and is a candidate gene for a drought avoidance QTL on rice chromosome 7.Plant biology (Stuttgart, Germany) · 2026Article
- OsELP Mediated Apoplastic Sequestration in Roots Acts as an Arsenic Filter, Limiting Grain Accumulation in Rice.Plant, cell & environment · 2026Article
- Multi-Experiment and Multi-Locus Genome-Wide Association Mapping for Grain Arsenic in Rice Population.Plant direct · 2025Article
- Recent Advances in Transcriptome Analysis Within the Realm of Low Arsenic Rice Breeding.Plants (Basel, Switzerland) · 2025Review
- Control strategies for rice "straighthead" through physicochemical and biological methods on arsenic transformation and transportation.Frontiers in plant science · 2025Review
- Physiological and proteomic analysis of halophyteFrontiers in plant science · 2025Article
- Genome-wide identification, expression and functional analysis of glutathioneFrontiers in plant science · 2025Article
- Pan-transcriptomic Profiling Demarcates Serendipita Indica-Phosphorus Mediated Tolerance Mechanisms in Rice Exposed to Arsenic Toxicity.Rice (New York, N.Y.) · 2023Article
- WRKY transcription factors: a promising way to deal with arsenic stress in rice.Molecular biology reports · 2022Review
- Transcriptomic and Metabolomic Analysis Unravels the Molecular Regulatory Mechanism of Fatty Acid Biosynthesis inInternational journal of molecular sciences · 2022Article
- Aberrant Expression of ADARB1 Facilitates Temozolomide Chemoresistance and Immune Infiltration in Glioblastoma.Frontiers in pharmacology · 2022Article
- Genetic loci regulating cadmium content in rice grains.Euphytica: Netherlands journal of plant breeding · 2021Article
- In silico analysis of functional linkage among arsenic induced MATE genes in rice.Biotechnology reports (Amsterdam, Netherlands) · 2020Article
- Deciphering the non-coding RNA-level response to arsenic stress in rice (Plant signaling & behavior · 2019Article
- Article
- Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.Plant molecular biology · 2018Article
- Elemental distribution in developing rice grains and the effect of flag-leaf arsenate exposure.Environmental and experimental botany · 2018Article
- Transcriptional changes measured in rice roots after exposure to arsenite-contaminated sediments.Environmental science and pollution research international · 2018Article
- Arsenic uptake, accumulation and toxicity in rice plants: Possible remedies for its detoxification: A review.Environmental science and pollution research international · 2017Review
- Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice.Frontiers in plant science · 2017Review
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
Abstract
Rice (Oryza sativa) varieties that are arsenate-tolerant (Bala) and -sensitive (Azucena) were used to conduct a transcriptome analysis of the response of rice seedlings to sodium arsenate (AsV) in hydroponic solution. RNA extracted from the roots of three replicate experiments of plants grown for 1 week in phosphate-free nutrient with or without 13.3 muM AsV was used to challenge the Affymetrix (52K) GeneChip Rice Genome array. A total of 576 probe sets were significantly up-regulated at least 2-fold in both varieties, whereas 622 were down-regulated. Ontological classification is presented. As expected, a large number of transcription factors, stress proteins, and transporters demonstrated differential expression. Striking is the lack of response of classic oxidative stress-responsive genes or phytochelatin synthases/synthatases. However, the large number of responses from genes involved in glutathione synthesis, metabolism, and transport suggests that glutathione conjugation and arsenate methylation may be important biochemical responses to arsenate challenge. In this report, no attempt is made to dissect differences in the response of the tolerant and sensitive variety, but analysis in a companion article will link gene expression to the known tolerance loci available in the BalaxAzucena mapping population.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.