Evidence map›Paper›PMID 18452311›Full record

ArticleBiochemistry2008

Cysteine scanning mutagenesis of TM5 reveals conformational changes in OxlT, the oxalate transporter of Oxalobacter formigenes.

Xicheng Wang, Liwen Ye, Caleb C McKinney, Mingye Feng, Peter C Maloney

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xicheng WangDepartment of Physiology, Johns Hopkins Medical School, Baltimore, Maryland 21205, USA.
Liwen Ye
Caleb C McKinney
Mingye Feng
Peter C Maloney
Johns Hopkins University · US

Funding

ION GRADIENTS AND ENERGY COUPLING IN BACTERIAR01GM024195 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI MALONEY, PETER C · 1985 to 2012
$4.5M
Ion Gradients and Energy Coupling in BacteriaR56GM024195 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI MALONEY, PETER C · 2007 to 2007
$515k
NIGMS NIH HHS GM24195NIGMS NIH HHS R01 GM024195NIGMS NIH HHS R56 GM024195
6 · The paper itself

Abstract

We constructed a single-cysteine panel encompassing TM5 of the oxalate transporter, OxlT. The 25 positions encompassed by TM5 were largely tolerant of mutagenesis, and functional product was recovered for 21 of the derived variants. For these derivatives, thiol-directed MTS-linked agents (MTSEA, MTSCE, and MTSES) were used as probes of transporter function, yielding 11 mutants that responded to probe treatment, as indicated by effects on oxalate transport. Further study identified three biochemical phenotypes among these responders. Group 1 included seven mutants, exemplified by G151C, displaying substrate protection against probe inhibition. Group 2 was comprised of a single mutant, P156C, which had unexpected behavior. In this case, we observed increased activity if weak acid/base or neutral probes were used, while exposure to probes introducing a fixed charge led to decreased function. In both instances, the presence of substrate prevented the observed response. Group 3 contained three mutants (e.g., S143C) in which probe sensitivity was increased by the presence of substrate. The finding of substrate-protectable probe modification in groups 1 and 2 suggests that TM5 lies on the permeation pathway, as do its structural counterparts, TM2, TM8, and TM11. In addition, we speculate that substrate binding facilitates TM5 conformational changes that allow new regions to become accessible to MTS-linked probes (group 3). These biochemical data are consistent with the recently developed OxlT homology model.

Indexed as

Bacterial ProteinsBiological TransportCysteineKineticsMembrane Transport ProteinsModels, BiologicalMolecular ConformationMutagenesisMutationOligonucleotide ProbesOxalobacter formigenesPhenotypeProtein ConformationProtein Structure, TertiaryBacterial ProteinsCysteineGlpT protein, E coliMembrane Transport ProteinsOligonucleotide ProbesOxlT protein, bacteria

Identifiers

PMID18452311
PMCPMC2430430
OpenAlexW2008763482

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.