Evidence map›Paper›PMID 18451108›Full record

ArticleGenes & development2008

Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules.

Katharina Merz, Maria Hondele, Hannah Goetze, Katharina Gmelch, Ulrike Stoeckl, Joachim Griesenbeck

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 180 citations in OpenAlex.

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  10. Nucleosomal DNA has topological memory.Nature communications · 2024
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  17. Two differentially stable rDNA loci coexist on the same chromosome and form a single nucleolus.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  20. Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Katharina MerzUniversitaet Regensburg, Institut für Biochemie, Genetik und Mikrobiologie, 93053 Regensburg, Germany.
Maria Hondele
Hannah Goetze
Katharina Gmelch
Ulrike Stoeckl
Joachim Griesenbeck
University of Regensburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synthesis of ribosomal RNAs (rRNAs) is the major transcriptional event in proliferating cells. In eukaryotes, ribosomal DNA (rDNA) is transcribed by RNA polymerase I from a multicopy locus coexisting in at least two different chromatin states. This heterogeneity of rDNA chromatin has been an obstacle to defining its molecular composition. We developed an approach to analyze differential protein association with each of the two rDNA chromatin states in vivo in the yeast Saccharomyces cerevisiae. We demonstrate that actively transcribed rRNA genes are largely devoid of histone molecules, but instead associate with the high-mobility group protein Hmo1.

Indexed as

Blotting, SouthernChromatinCross-Linking ReagentsDNA, FungalDNA, RibosomalFicusinGene DosageGenes, rRNAHigh Mobility Group ProteinsHistonesModels, GeneticPromoter Regions, GeneticProtein BindingRibosomal ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsChromatinCross-Linking ReagentsDNA, FungalDNA, RibosomalFicusinHigh Mobility Group ProteinsHistonesHMO1 protein, S cerevisiaeRibosomal ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID18451108
PMCPMC2335315
OpenAlexW2123636950

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.