Evidence map›Paper›PMID 18450744›Full record

ArticleThe Journal of biological chemistry2008

Deoxycholate interacts with IpaD of Shigella flexneri in inducing the recruitment of IpaB to the type III secretion apparatus needle tip.

Kenneth F Stensrud, Philip R Adam, Cassandra D La Mar, Andrew J Olive, Gerald H Lushington, Raghavi Sudharsan, Naomi L Shelton, Richard S Givens, Wendy L Picking, William D Picking

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. Epithelial Cell Infection Analyses with Shigella.Journal of visualized experiments : JoVE · 2024
    Article
  3. Functional assays to evaluate antibody-mediated responses againstFrontiers in cellular and infection microbiology · 2023
    Review
  4. Article
  5. Article
  6. BipD ofMicroorganisms · 2021
    Review
  7. TheMicroorganisms · 2021
    Review
  8. Review
  9. Structural Insights ofFrontiers in cellular and infection microbiology · 2021
    Article
  10. Review
  11. The T3SS ofMicroorganisms · 2020
    Review
  12. Review
  13. Article
  14. The type III secretion system needle, tip, and translocon.Protein science : a publication of the Protein Society · 2019
    Review
  15. Gut Microbiota and Colonization Resistance against Bacterial Enteric Infection.Microbiology and molecular biology reviews : MMBR · 2019
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Kenneth F StensrudDepartment of Chemistry, University of Kansas, Lawrence, Kansas 66045, USA.
Philip R Adam
Cassandra D La Mar
Andrew J Olive
Gerald H Lushington
Raghavi Sudharsan
Naomi L Shelton
Richard S Givens
Wendy L Picking
William D Picking
University of Kansas · US

Funding

UNDERSTANDING THE ROLE OF SMALL RNAS IN ARABIDOPSIS POLLEN DEVELOPMENTP20RR016475 · NCRR · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ACKLEY, BRIAN DOUGLAS · 2001 to 2011
$38.1M
MBRS IMSD PROGRAM AT THE UNIVERSITY OF KANSASR25GM062232 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI CARTWRIGHT, PAULYN, HANSON, PAUL R. · 2001 to 2018
$6.9M
Control of Type III secretion in Shigella by lpaDR01AI067858 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI PICKING, WENDY L. · 2007 to 2011
$1.9M
Structure and Function of IpaC from Shigella flexneriR01AI034428 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI PICKING, WILLIAM D. · 2003 to 2006
$999k
Light activated bioactive substrate releaseR01GM072910 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI GIVENS, RICHARD SPENCER · 2005 to 2008
$906k
IPAC-MEDIATED INVASION OF EPITHELIAL CELLS BY SHIGELLAR29AI034428 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI PICKING, WILLIAM D. · 1997 to 2001
$216k
IpaD triggers type III secretion in ShigellaR03AI072510 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI PICKING, WENDY L. · 2007 to 2008
$143k
NCRR NIH HHS P20 RR016475NIAID NIH HHS AI034428NIAID NIH HHS AI067858NIAID NIH HHS AI072510NIGMS NIH HHS R01 GM072910NIGMS NIH HHS R01 GM72910NIGMS NIH HHS R25GM62232
6 · The paper itself

Abstract

Type III secretion (TTS) is an essential virulence function for Shigella flexneri that delivers effector proteins that are responsible for bacterial invasion of intestinal epithelial cells. The Shigella TTS apparatus (TTSA) consists of a basal body that spans the bacterial inner and outer membranes and a needle exposed at the pathogen surface. At the distal end of the needle is a "tip complex" composed of invasion plasmid antigen D (IpaD). IpaD not only regulates TTS, but is required for the recruitment and stable association of the translocator protein IpaB at the TTSA needle tip in the presence of deoxycholate or other bile salts. This phenomenon is not accompanied by induction of TTS or the recruitment of IpaC to the Shigella surface. We now show that IpaD specifically binds fluorescein-labeled deoxycholate and, based on energy transfer measurements and docking simulations, this interaction appears to occur where the N-terminal domain of IpaD meets its central coiled-coil, a region that may also be involved in needle-tip interactions. TTS is initiated as a series of distinct steps and that small molecules present in the bacterial milieu are capable of inducing the first step of TSS through interactions with the needle tip protein IpaD. Furthermore, the amino acids proposed to be important for deoxycholate binding by IpaD appear to have significant roles in regulating tip complex composition and pathogen entry into host cells.

Indexed as

Antigens, BacterialBacterial ProteinsCell Membrane StructuresDeoxycholic AcidProtein BindingShigella flexneriAntigens, BacterialBacterial ProteinsDeoxycholic AcidipaB protein, ShigellaIpaD protein, Shigella flexneri

Identifiers

PMID18450744
PMCPMC2441547
OpenAlexW1976416185

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.