Evidence map›Paper›PMID 18449558›Full record

ArticleChromosoma2008

Sites of strong Rec12/Spo11 binding in the fission yeast genome are associated with meiotic recombination and with centromeres.

Katja Ludin, Juan Mata, Stephen Watt, Elisabeth Lehmann, Jürg Bähler, Jürg Kohli

Open access · bronzeAbstract read
In one paragraph

Article in Chromosoma, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Repression of harmful meiotic recombination in centromeric regions.Seminars in cell & developmental biology · 2016
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Many functions of the meiotic cohesin.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2010
    Review
  13. Article
  14. RNAi and heterochromatin repress centromeric meiotic recombination.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Katja LudinInstitute of Cell Biology, University of Bern, 3012 Bern, Switzerland. katja.ludin@izb.unibern.ch
Juan Mata
Stephen Watt
Elisabeth Lehmann
Jürg Bähler
Jürg Kohli
University of Bern · CHCancer Research UK · GBUniversity of Cambridge · GB

Funding

Cancer Research UK A6517Cancer Research UK C9546/A6517Wellcome Trust 077118Wellcome Trust 098051
6 · The paper itself

Abstract

Meiotic recombination arises from Rec12/Spo11-dependent formation of DNA double-strand breaks (DSBs) and their subsequent repair. We identified Rec12-binding peaks across the Schizosaccharomyces pombe genome using chromatin immunoprecipitation after reversible formaldehyde cross-linking combined with whole-genome DNA microarrays. Strong Rec12 binding coincided with previously identified DSBs at the recombination hotspots ura4A, mbs1, and mbs2 and correlated with DSB formation at a new site. In addition, Rec12 binding corresponded to eight novel conversion hotspots and correlated with crossover density in segments of chromosome I. Notably, Rec12 binding inversely correlated with guanine-cytosine (GC) content, contrary to findings in Saccharomyces cerevisiae. Although both replication origins and Rec12-binding sites preferred AT-rich gene-free regions, they seemed to exclude each other. We also uncovered a connection between binding sites of Rec12 and meiotic cohesin Rec8. Rec12-binding peaks lay often within 2.5 kb of a Rec8-binding peak. Rec12 binding showed preference for large intergenic regions and was found to bind preferentially near to genes expressed strongly in meiosis. Surprisingly, Rec12 binding was also detected in centromeric core regions, which raises the intriguing possibility that Rec12 plays additional roles in meiotic chromosome dynamics.

Indexed as

MeiosisRecombination, GeneticBase CompositionBinding SitesCentromereChromatinCohesinsDNA Breaks, Double-StrandedEndodeoxyribonucleasesEsterasesGene ExpressionGenome, FungalGenotypeMeiotic Recombination Protein SPO11Oligonucleotide Array Sequence AnalysisPhosphoproteinsChromatinCohesinsEndodeoxyribonucleasesEsterasesMeiotic Recombination Protein SPO11Phosphoproteinsrec12 protein, S pombeREC8 protein, S pombeSchizosaccharomyces pombe Proteins

Identifiers

PMID18449558
PMCPMC3671157
OpenAlexW2026665194

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.