Evidence map›Paper›PMID 18446222›Full record

ArticlePloS one2008

In silico and biochemical analysis of Physcomitrella patens photosynthetic antenna: identification of subunits which evolved upon land adaptation.

Alessandro Alboresi, Stefano Caffarri, Fabien Nogue, Roberto Bassi, Tomas Morosinotto

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 140 citations in OpenAlex.

  1. Article
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  5. Unique structural attributes of the PSI-NDH supercomplex in Physcomitrium patens.The Plant journal : for cell and molecular biology · 2024
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  12. Identification and expression analysis of chlorophyll a/b binding protein gene family in grape (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Alessandro AlboresiLaboratoire de Génétique et Biophysique des Plantes-UMR 6191 CEA-CNRS-Université de la Méditerranée, Marseille, France.
Stefano Caffarri
Fabien Nogue
Roberto Bassi
Tomas Morosinotto
Commissariat à l'Énergie Atomique et aux Énergies Alternatives · FRDépartement Biologie et Amélioration des Plantes · FRUniversity of Verona · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn eukaryotes the photosynthetic antenna system is composed of subunits encoded by the light harvesting complex (Lhc) multigene family. These proteins play a key role in photosynthesis and are involved in both light harvesting and photoprotection. The moss Physcomitrella patens is a member of a lineage that diverged from seed plants early after land colonization and therefore by studying this organism, we may gain insight into adaptations to the aerial environment. PRINCIPAL

findingsIn this study, we characterized the antenna protein multigene family in Physcomitrella patens, by sequence analysis as well as biochemical and functional investigations. Sequence identification and analysis showed that some antenna polypeptides, such as Lhcb3 and Lhcb6, are present only in land organisms, suggesting they play a role in adaptation to the sub-aerial environment. Our functional analysis which showed that photo-protective mechanisms in Physcomitrella patens are very similar to those in seed plants fits with this hypothesis. In particular, Physcomitrella patens also activates Non Photochemical Quenching upon illumination, consistent with the detection of an ortholog of the PsbS protein. As a further adaptation to terrestrial conditions, the content of Photosystem I low energy absorbing chlorophylls also increased, as demonstrated by differences in Lhca3 and Lhca4 polypeptide sequences, in vitro reconstitution experiments and low temperature fluorescence spectra.

conclusionsThis study highlights the role of Lhc family members in environmental adaptation and allowed proteins associated with mechanisms of stress resistance to be identified within this large family.

Indexed as

Adaptation, PhysiologicalComputational BiologyEvolution, MolecularPhotosynthesisAmino Acid SequenceBryopsidaConserved SequenceLightLight-Harvesting Protein ComplexesModels, BiologicalMolecular Sequence DataPhotosystem II Protein ComplexPhotosystem I Protein ComplexPhylogenyProtein SubunitsSequence Analysis, ProteinLight-Harvesting Protein ComplexesPhotosystem II Protein ComplexPhotosystem I Protein ComplexProtein SubunitsXanthophylls

Identifiers

PMID18446222
PMCPMC2323573
OpenAlexW1966019156

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.