Evidence map›Paper›PMID 18445284›Full record

ArticleBMC microbiology2008

Stable transformation of an episomal protein-tagging shuttle vector in the piscine diplomonad Spironucleus vortens.

Scott C Dawson, Jonathan K Pham, Susan A House, Elizabeth E Slawson, Daniela Cronembold, W Zacheus Cande

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. A protein expression system for tandem affinity purification in Xanthomonas citri subsp. citri.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Scott C DawsonDepartment of Microbiology, 255 Briggs Hall, One Shields Ave,, UC-Davis Davis, CA 95616, USA. scdawson@ucdavis.edu
Jonathan K Pham
Susan A House
Elizabeth E Slawson
Daniela Cronembold
W Zacheus Cande
University of California, Davis · USBerkeley College · USInstitute of Molecular and Cell Biology · RU

Funding

Kinesin like proteins in the parasite, GiardiaR01AI054693 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI CANDE, WILLIAM ZACHEUS · 2003 to 2012
$3.5M
NIAID NIH HHS R01 AI054693PHS HHS A1054693
6 · The paper itself

Abstract

backgroundDiplomonads are common free-living inhabitants of anoxic aquatic environments and are also found as intestinal commensals or parasites of a wide variety of animals. Spironucleus vortens is a putatively commensal diplomonad of angelfish that grows to high cell densities in axenic culture. Genomic sequencing of S. vortens is in progress, yet little information is available regarding molecular and cellular aspects of S. vortens biology beyond descriptive ultrastructural studies. To facilitate the development of S. vortens as an additional diplomonad experimental model, we have constructed and stably transformed an episomal plasmid containing an enhanced green fluorescent protein (GFP) tag, an AU1 epitope tag, and a tandem affinity purification (TAP) tag. This construct also contains selectable antibiotic resistance markers for both S. vortens and E. coli.

resultsStable transformants of S. vortens grew relatively rapidly (within 7 days) after electroporation and were maintained under puromycin selection for over 6 months. We expressed the enhanced GFP variant, eGFP, under transcriptional control of the S. vortens histone H3 promoter, and visually confirmed diffuse GFP expression in over 50% of transformants. Next, we generated a histone H3::GFP fusion using the S. vortens conventional histone H3 gene and its native promoter. This construct was also highly expressed in the majority of S. vortens transformants, in which the H3::GFP fusion localized to the chromatin in both nuclei. Finally, we used fluorescence in situ hybridization (FISH) of the episomal plasmid to show that the transformed plasmid localized to only one nucleus/cell and was present at roughly 10-20 copies per nucleus. Because S. vortens grows to high densities in laboratory culture, it is a feasible diplomonad from which to purify native protein complexes. Thus, we also included a TAP tag in the plasmid constructs to permit future tagging and subsequent purification of protein complexes by affinity chromatography via a two-step purification procedure.

conclusionCurrently, progress in protistan functional and comparative genomics is hampered by the lack of free-living or commensal protists in axenic culture, as well as a lack of molecular genetic tools with which to study protein function in these organisms. This stable transformation protocol combined with the forthcoming genome sequence allows Spironucleus vortens to serve as a new experimental model for cell biological studies and for comparatively assessing protein functions in related diplomonads such as the human intestinal parasite, Giardia intestinalis.

Indexed as

Transformation, GeneticAnimalsCell NucleusDiplomonadidaElectroporationGenetic VectorsGreen Fluorescent ProteinsHistonesIn Situ Hybridization, FluorescenceMicroscopy, FluorescenceMicrotubulesPlasmidsPromoter Regions, GeneticProtozoan ProteinsRecombinant Fusion ProteinsReverse Transcriptase Polymerase Chain Reactionenhanced green fluorescent proteinGreen Fluorescent ProteinsHistonesProtozoan ProteinsRecombinant Fusion Proteins

Identifiers

PMID18445284
PMCPMC2386477
OpenAlexW2048360581

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.