Evidence map›Paper›PMID 18443286›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Molecular mechanism of pH sensing in KcsA potassium channels.

Ameer N Thompson, David J Posson, Pirooz V Parsa, Crina M Nimigean

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 144 citations in OpenAlex.

  1. Review
  2. Article
  3. The vacuolar KScience advances · 2024
    Article
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  6. Article
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  8. Article
  9. Mechanisms underlying drug-mediated regulation of membrane protein function.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Article
  11. Signature of Glycylglutamic Acid Structure.International journal of biochemistry and biophysics · 2021
    Article
  12. Article
  13. NMR studies of lipid regulation of the KBiochimica et biophysica acta. Biomembranes · 2021
    Article
  14. Article
  15. Selectivity filter ion binding affinity determines inactivation in a potassium channel.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
  17. Probing allosteric coupling in a constitutively open mutant of the ion channel KcsA using solid-state NMR.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Article
  19. Article
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ameer N ThompsonDepartment of Anesthesiology, Weill Cornell Medical College, New York City, NY 10065, USA.
David J Posson
Pirooz V Parsa
Crina M Nimigean
Brandeis University · USCornell University · US

Funding

MECHANISM OF ION CHANNEL MODULATION BY LIGANDSR01GM077560 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIMIGEAN, CRINA M · 2007 to 2011
$1.9M
NIGMS NIH HHS R01 GM077560
6 · The paper itself

Abstract

The bacterial potassium channel KcsA is gated by high concentrations of intracellular protons, allowing the channel to open at pH < 5.5. Despite prior attempts to determine the mechanism responsible for pH gating, the proton sensor has remained elusive. We have constructed a KcsA channel mutant that remains open up to pH 9.0 by replacing key ionizable residues from the N and C termini of KcsA with residues mimicking their protonated counterparts with respect to charge. A series of individual and combined mutations were investigated by using single-channel recordings in lipid bilayers. We propose that these residues are the proton-binding sites and at neutral pH they form a complex network of inter- and intrasubunit salt bridges and hydrogen bonds near the bundle crossing that greatly stabilize the closed state. In our model, these residues change their ionization state at acidic pH, thereby disrupting this network, modifying the electrostatic landscape near the channel gate, and favoring channel opening.

Indexed as

Biosensing TechniquesModels, MolecularBacterial ProteinsEscherichia coli ProteinsGlutamic AcidHistidineHydrogen-Ion ConcentrationIon Channel GatingMutationPotassium ChannelsPotassium Channels, Voltage-GatedProtein Structure, SecondaryProtein Structure, TertiaryBacterial ProteinsEscherichia coli ProteinsGlutamic AcidHistidineKcsA protein, Streptomyces coelicolorPotassium ChannelsPotassium Channels, Voltage-Gated

Identifiers

PMID18443286
PMCPMC2383984
OpenAlexW2169735436

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.