Evidence map›Paper›PMID 18443095›Full record

ArticleInfection and immunity2008

Use of gene dosage effects for a whole-genome screen to identify Mycobacterium marinum macrophage infection loci.

Bonggoo Park, Selvakumar Subbian, Sahar H El-Etr, Suat L G Cirillo, Jeffrey D Cirillo

Abstract readEvaluation Study
In one paragraph

Article in Infection and immunity, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Exposure ofNPJ microgravity · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bonggoo ParkDepartment of Microbial and Molecular Pathogenesis, Texas A&M University System Health Sciences Center, 467 Reynolds Medical Building, College Station, TX 77843-1114, USA.
Selvakumar Subbian
Sahar H El-Etr
Suat L G Cirillo
Jeffrey D Cirillo

Funding

Mycobacterial Dissemination and PersistenceR01AI047866 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI CIRILLO, JEFFREY D. · 2002 to 2010
$2.0M
NIAID NIH HHS AI47866NIAID NIH HHS R01 AI047866
6 · The paper itself

Abstract

We recently identified two loci, mel1 and mel2, that affect macrophage infection by Mycobacterium marinum. The ability of these loci to confer enhanced infection in trans is presumably due to gene dosage effects since their presence on plasmids increases expression from five- to eightfold. Reasoning that this phenomenon would allow identification of other mycobacterial genes involved in macrophage infection, we conducted a screen of an M. marinum DNA library that provides 2.6-fold coverage of the entire genome for clones that affect macrophage infection. Our preliminary screen identified 76 plasmids that carry loci affecting macrophage infection. We eliminated plasmids that do not confer the expected phenotype when retransformed (70%), that have identical physical maps (5%), or that carry either of the mel1 or mel2 loci (14%) from further consideration. Four loci that confer enhanced infection (mel) and four that confer repressed infection (mrl) of macrophages were identified, and two of each group were chosen for detailed analysis. Saturating transposon mutagenesis was used to identify the loci responsible, and M. marinum mutants were constructed in the genes involved. We expect these genes to provide insight into how mycobacteria parasitize macrophages, an important component of innate immunity.

Indexed as

Chromosome MappingGene DosageAnimalsBacterial ProteinsCell LineCosmidsDNA Transposable ElementsGene Expression Regulation, BacterialGenomic LibraryHumansMacrophagesMiceMutagenesis, InsertionalMycobacterium Infections, NontuberculousMycobacterium marinumVirulenceBacterial ProteinsDNA Transposable Elements

Identifiers

PMID18443095
PMCPMC2446711

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.