Evidence map›Paper›PMID 18437204›Full record

ArticlePLoS genetics2008

Heterogeneity of breast cancer associations with five susceptibility loci by clinical and pathological characteristics.

Montserrat Garcia-Closas, Per Hall, Heli Nevanlinna, Karen Pooley, Jonathan Morrison, Douglas A Richesson, Stig E Bojesen, Børge G Nordestgaard, Christen K Axelsson, Jose I Arias and 104 more

Abstract read
In one paragraph

Article in PLoS genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 201 papers, 18 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
201citing papers in PubMed, 18 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

201 citing papers in PubMed, 18 syntheses or guidelines pooled it.

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  9. Polymorphism of 8q24 rsl3281615 and breast cancer risk : a meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2013
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  18. The 6q22.33 locus and breast cancer susceptibility.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2009
    Pooled it
  19. Article
  20. Article

141 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

114 authors.

Montserrat Garcia-ClosasDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Marylan, United States of America. montse@nih.gov
Per Hall
Heli Nevanlinna
Karen Pooley
Jonathan Morrison
Douglas A Richesson
Stig E Bojesen
Børge G Nordestgaard
Christen K Axelsson
Jose I Arias
Roger L Milne
Gloria Ribas
Anna González-Neira
Javier Benítez
Pilar Zamora
Hiltrud Brauch
Christina Justenhoven
Ute Hamann
Yon-Dschun Ko
Thomas Bruening
Susanne Haas
Thilo Dörk
Peter Schürmann
Peter Hillemanns
Natalia Bogdanova
Michael Bremer
Johann Hinrich Karstens
Rainer Fagerholm
Kirsimari Aaltonen
Kristiina Aittomäki
Karl von Smitten
Carl Blomqvist
Arto Mannermaa
Matti Uusitupa
Matti Eskelinen
Maria Tengström
Veli-Matti Kosma
Vesa Kataja
Georgia Chenevix-Trench
Amanda B Spurdle
Jonathan Beesley
Xiaoqing Chen
Australian Ovarian Cancer Management Group
Kathleen Cuningham Foundation Consortium for Research into Familial Breast Cancer
Peter Devilee
Christi J van Asperen
Catharina E Jacobi
Rob A E M Tollenaar
Petra E A Huijts
Jan G M Klijn
Jenny Chang-Claude
Silke Kropp
Tracy Slanger
Dieter Flesch-Janys
Elke Mutschelknauss
Ramona Salazar
Shan Wang-Gohrke
Fergus Couch
Ellen L Goode
Janet E Olson
Celine Vachon
Zachary S Fredericksen
Graham G Giles
Laura Baglietto
Gianluca Severi
John L Hopper
Dallas R English
Melissa C Southey
Christopher A Haiman
Brian E Henderson
Laurence N Kolonel
Loic Le Marchand
Daniel O Stram
David J Hunter
Susan E Hankinson
David G Cox
Rulla Tamimi
Peter Kraft
Mark E Sherman
Stephen J Chanock
Jolanta Lissowska
Louise A Brinton
Beata Peplonska
Jan G M Klijn
Maartje J Hooning
Han Meijers-Heijboer
J Margriet Collee
Ans van den Ouweland
Andre G Uitterlinden
Jianjun Liu
Low Yen Lin
Li Yuqing
Keith Humphreys
Kamila Czene
Angela Cox
Sabapathy P Balasubramanian
Simon S Cross
Malcolm W R Reed
Fiona Blows
Kristy Driver
Alison Dunning
Jonathan Tyrer
Bruce A J Ponder
Suleeporn Sangrajrang
Paul Brennan
James McKay
Fabrice Odefrey
Valerie Gabrieau
Alice Sigurdson
Michele Doody
Jeffrey P Struewing
Bruce Alexander
Douglas F Easton
Paul D Pharoah

Funding

The Role of CHFR in Tumorigenesis and Paclitaxel-Sensitivity in Breast CancerP50CA116201 · NCI · MAYO CLINIC ROCHESTER · PI PETER C LUCAS · 2005 to 2026
$49.9M
Genetic epidemiology of cell division regulation in breast cancerR01CA122340 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH · 2007 to 2011
$3.0M
Breast Cancer Now 2004NOV49Cancer Research UK 10118Cancer Research UK 10119Cancer Research UK 10124Cancer Research UK 11021Intramural NIH HHSNCI NIH HHS P50 CA116201NCI NIH HHS R01 CA122340
6 · The paper itself

Abstract

A three-stage genome-wide association study recently identified single nucleotide polymorphisms (SNPs) in five loci (fibroblast growth receptor 2 (FGFR2), trinucleotide repeat containing 9 (TNRC9), mitogen-activated protein kinase 3 K1 (MAP3K1), 8q24, and lymphocyte-specific protein 1 (LSP1)) associated with breast cancer risk. We investigated whether the associations between these SNPs and breast cancer risk varied by clinically important tumor characteristics in up to 23,039 invasive breast cancer cases and 26,273 controls from 20 studies. We also evaluated their influence on overall survival in 13,527 cases from 13 studies. All participants were of European or Asian origin. rs2981582 in FGFR2 was more strongly related to ER-positive (per-allele OR (95%CI) = 1.31 (1.27-1.36)) than ER-negative (1.08 (1.03-1.14)) disease (P for heterogeneity = 10(-13)). This SNP was also more strongly related to PR-positive, low grade and node positive tumors (P = 10(-5), 10(-8), 0.013, respectively). The association for rs13281615 in 8q24 was stronger for ER-positive, PR-positive, and low grade tumors (P = 0.001, 0.011 and 10(-4), respectively). The differences in the associations between SNPs in FGFR2 and 8q24 and risk by ER and grade remained significant after permutation adjustment for multiple comparisons and after adjustment for other tumor characteristics. Three SNPs (rs2981582, rs3803662, and rs889312) showed weak but significant associations with ER-negative disease, the strongest association being for rs3803662 in TNRC9 (1.14 (1.09-1.21)). rs13281615 in 8q24 was associated with an improvement in survival after diagnosis (per-allele HR = 0.90 (0.83-0.97). The association was attenuated and non-significant after adjusting for known prognostic factors. Our findings show that common genetic variants influence the pathological subtype of breast cancer and provide further support for the hypothesis that ER-positive and ER-negative disease are biologically distinct. Understanding the etiologic heterogeneity of breast cancer may ultimately result in improvements in prevention, early detection, and treatment.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideApoptosis Regulatory ProteinsBreast NeoplasmsCase-Control StudiesChromosomes, Human, Pair 8FemaleHigh Mobility Group ProteinsHumansLinkage DisequilibriumMAP Kinase Kinase Kinase 1Microfilament ProteinsMiddle AgedOdds RatioReceptor, Fibroblast Growth Factor, Type 2Receptors, ProgesteroneApoptosis Regulatory ProteinsFGFR2 protein, humanHigh Mobility Group ProteinsLSP1 protein, humanMAP3K1 protein, humanMAP Kinase Kinase Kinase 1Microfilament ProteinsReceptor, Fibroblast Growth Factor, Type 2Receptors, ProgesteroneTOX3 protein, humanTrans-Activators

Identifiers

PMID18437204
PMCPMC2291027

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.