Evidence map›Paper›PMID 18434539›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

DNA synthesis from unbalanced nucleotide pools causes limited DNA damage that triggers ATR-CHK1-dependent p53 activation.

Kedar Hastak, Rajib K Paul, Mukesh K Agarwal, Vijay S Thakur, A R M Ruhul Amin, Sudesh Agrawal, R Michael Sramkoski, James W Jacobberger, Mark W Jackson, George R Stark and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Article
  3. Purine metabolic adaptation protects the endothelium from disturbed flow-induced DNA damage and atherosclerosis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  5. Arginine Metabolism SupportsbioRxiv : the preprint server for biology · 2025
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  9. Review
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  14. Expression of the monocarboxylate transporter MCT1 is required for virus-specific mouse CD8Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Kedar HastakDepartment of Genetics and Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH 44106, USA.
Rajib K Paul
Mukesh K Agarwal
Vijay S Thakur
A R M Ruhul Amin
Sudesh Agrawal
R Michael Sramkoski
James W Jacobberger
Mark W Jackson
George R Stark
Munna L Agarwal
Case Western Reserve University · USCleveland Clinic Lerner College of Medicine · US

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARK R CHANCE · 1987 to 2026
$142.3M
P53 MODIFICATION AND NOVEL BIOLOGICAL FUNCTIONSR01GM049345 · NIGMS · CLEVELAND CLINIC LERNER COL/MED-CWRU · PI STARK, GEORGE ROBERT · 1993 to 2006
$2.5M
Functional analysis of signaling to and from p53 in cancerR01CA098916 · NCI · CLEVELAND CLINIC FOUNDATION · PI AGARWAL, MUNNA L. · 2003 to 2007
$1.3M
NCI NIH HHS CA043703NCI NIH HHS CA973413NCI NIH HHS P30 CA043703NCI NIH HHS R01 CA098916NCI NIH HHS R01 CA98916-02NIGMS NIH HHS GM 49345NIGMS NIH HHS R01 GM049345
6 · The paper itself

Abstract

p53-dependent G(1) and G(2) cell cycle checkpoints are activated in response DNA damage that help to maintain genomic stability. p53 also helps to protect cells from damage that occurs during S phase, for example, when the cells are starved for DNA precursors or irradiated with a low dose of UV. p53 is activated in normal cells starved for pyrimidine nucleotides by treatment with N-(phosphonacetyl)-l-aspartate (PALA). The treated cells progress through a first S phase with kinetics similar to those of untreated cells. However, the DNA of the treated cells begins to become damaged rapidly, within 12 h, as revealed by a comet assay, which detects broken DNA, and by staining for phosphorylated histone H2AX, which accumulates at sites of DNA damage. Because the cells survive, the damage must be reversible, suggesting single-strand breaks or gaps as the most likely possibility. The transiently damaged DNA stimulates activation of ATR and CHK1, which in turn catalyze the phosphorylation and accumulation of p53. Although PALA-induced DNA damage occurs only in dividing cells, the p53 that is activated is only competent to transcribe genes such as p21 and macrophage inhibitory cytokine 1 (whose products regulate G(2) and G(1) or S phase checkpoints, respectively) after the cells have exited the S phase during which damage occurs. We propose that p53 is activated by stimulation of mismatch repair in response to the misincorporation of deoxynucleotides into newly synthesized DNA, long before the lack of pyrimidine nucleoside triphosphates causes the rate of DNA synthesis to slow appreciably.

Indexed as

DNA DamageAspartic AcidAtaxia Telangiectasia Mutated ProteinsCell Cycle ProteinsCell LineCheckpoint Kinase 1DNADNA-Binding ProteinsHumansModels, BiologicalNucleotidesPhosphonoacetic AcidPhosphorylationProtein KinasesProtein Serine-Threonine KinasesPyrimidinesAspartic AcidAtaxia Telangiectasia Mutated ProteinsATM protein, humanATR protein, humanCell Cycle ProteinsCheckpoint Kinase 1CHEK1 protein, humanDNADNA-Binding ProteinsNucleotidesPhosphonoacetic AcidProtein KinasesProtein Serine-Threonine KinasespyrimidinePyrimidinessparfosic acidTumor Suppressor Protein p53Tumor Suppressor Proteins

Identifiers

PMID18434539
PMCPMC2359797
OpenAlexW1972650300

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.