Evidence map›Paper›PMID 18434391›Full record

ArticleJournal of virology2008

Selection of T1249-resistant human immunodeficiency virus type 1 variants.

Dirk Eggink, Christopher E Baldwin, Yiqun Deng, Johannes P M Langedijk, Min Lu, Rogier W Sanders, Ben Berkhout

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 71 citations in OpenAlex.

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  6. Optimization of peptidic HIV-1 fusion inhibitor T20 by phage display.Protein science : a publication of the Protein Society · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Dirk EgginkLaboratory of Experimental Virology, Department of Medical Microbiology, Center for Infection and Immunity Amsterdam, Academic Medical Center of the University of Amsterdam, P.O. Box 22700, 1100 DE Amsterdam, The Netherlands.
Christopher E Baldwin
Yiqun Deng
Johannes P M Langedijk
Min Lu
Rogier W Sanders
Ben Berkhout
Academic Medical Center · NLCornell University · USPepscan (Netherlands) · NLUniversity of Amsterdam · NL

Funding

STRUCTURE AND FUNCTION OF THE HIV-1 ENVELOPE PROTEINR01AI042382 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI LU, MIN · 1999 to 2008
$3.1M
Structure & Function of the HIV-1 Envelope ProteinR56AI042382 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI LU, MIN · 2010 to 2010
$390k
STRUCTURE/FUNCTION OF THE HIV1 ENVELOPE PROTEINR21AI042382 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI LU, MIN · 1998 to 1998
–
NIAID NIH HHS AI42382NIAID NIH HHS R01 AI042382NIAID NIH HHS R56 AI042382
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1) entry is an attractive target for therapeutic intervention. Two drugs that inhibit this process have been approved: the fusion inhibitor T20 (enfuvirtide [Fuzeon]) and, more recently, the CCR5 blocker maraviroc (Selzentry). T1249 is a second-generation fusion inhibitor with improved antiviral potency compared to the first-generation peptide T20. We selected T1249-resistant HIV-1 variants in vitro by serial virus passage in the presence of increasing T1249 doses after passage with wild-type and T20-resistant variants. Sequence analysis revealed the acquisition of substitutions within the HR1 region of the gp41 ectodomain. The virus acquired mutations of residue V38 to either E or R in 10 of 19 cultures. Both E and R at position 38 were confirmed to cause resistance to T1249, as well as cross-resistance to T20 and C34, but not to the third-generation fusion inhibitor T2635. We also observed substitutions at residues 79 and 90 (Q79E and K90E), which provide modest resistance to T1249 and, interestingly, T2635. Thus, the gp41 amino acid position implicated in T20 resistance (V38 replaced by A, G, or W) is also responsible for T1249 resistance (V38 replaced by E, R, or K). These results indicate that T20 and T1249 exhibit very similar inhibition modes that call for similar but not identical resistance mutations. All T1249-resistant viruses with changes at position 38 are cross resistant to T20, but not vice versa. Furthermore, substitutions at position 38 do not provide resistance to the third-generation inhibitor T2635, while substitution at positions 79 and 90 do, suggesting different resistance mechanisms.

Indexed as

Models, MolecularSelection, GeneticAmino Acid SequenceCircular DichroismDrug Resistance, ViralHIV-1HIV Envelope Protein gp41HIV Fusion InhibitorsInhibitory Concentration 50Molecular Sequence DataMutationPeptide FragmentsUltracentrifugationVirus InternalizationHIV Envelope Protein gp41HIV Fusion InhibitorsPeptide Fragmentspeptide T1249

Identifiers

PMID18434391
PMCPMC2447091
OpenAlexW2158049965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.