Evidence map›Paper›PMID 18434168›Full record

ReviewBioorganic & medicinal chemistry2009

Using specificity to strategically target proteases.

Mark D Lim, Charles S Craik

Abstract readReview
In one paragraph

Review in Bioorganic & medicinal chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Design of ultrasensitive probes for human neutrophil elastase through hybrid combinatorial substrate library profiling.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  3. Article
  4. Article
  5. Review
  6. Proteolytic Activity Matrix Analysis (PrAMA) for simultaneous determination of multiple protease activities.Integrative biology : quantitative biosciences from nano to macro · 2011
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Mark D LimDepartment of Pharmaceutical Chemistry, University of California, School of Pharmacy, 513 Parnassus Avenue Room S-926, San Francisco, CA 94158, USA.
Charles S Craik

Funding

Structure Biology and Targeted Drug Design for AIDSP01GM056531 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ORTIZ DE MONTELLANO, PAUL R · 1997 to 2006
$11.0M
Nanolabels of active proteases for cancer detectionF32CA123649 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, MARK D · 2006 to 2006
$35k
NCI NIH HHS F32 CA123649NCI NIH HHS F32 CA 123649-01NIGMS NIH HHS GM56531NIGMS NIH HHS P01 GM056531
6 · The paper itself

Abstract

Proteases are a family of naturally occurring enzymes in the body whose dysregulation has been implicated in numerous diseases and cancers. Their ability to selectively and catalytically turnover substrate adds both signal amplification and functionality as parameters for the detection of disease. This review will focus on the development of activity-based methodologies to characterize proteases, and in particular, the use of positional scanning, synthetic combinatorial libraries (PS-SCL's), and substrate activity screening (SAS) assays. The use of these approaches to better understand a protease's natural substrate will be discussed as well as the technologies that emerged.

Indexed as

Combinatorial Chemistry TechniquesMolecular ProbesPeptide HydrolasesPeptide LibraryProtease InhibitorsSmall Molecule LibrariesSubstrate SpecificityMolecular ProbesPeptide HydrolasesPeptide LibraryProtease InhibitorsSmall Molecule Libraries

Identifiers

PMID18434168
PMCPMC2663002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.