Evidence map›Paper›PMID 18433452›Full record

ArticleMolecular microbiology2008

An amphiphilic region in the cytoplasmic domain of KdpD is recognized by the signal recognition particle and targeted to the Escherichia coli membrane.

Katja S Maier, Stefanie Hubich, Helga Liebhart, Susanne Krauss, Andreas Kuhn, Sandra J Facey

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. The Dynamic SecYEG Translocon.Frontiers in molecular biosciences · 2021
    Review
  2. Article
  3. Article
  4. The SRP signal sequence of KdpD.Scientific reports · 2019
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Biogenesis of bacterial inner-membrane proteins.Cellular and molecular life sciences : CMLS · 2010
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Katja S MaierInstitute of Microbiology, University of Hohenheim, 70599 Stuttgart, Germany.
Stefanie Hubich
Helga Liebhart
Susanne Krauss
Andreas Kuhn
Sandra J Facey
University of Hohenheim · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The sensor protein KdpD of Escherichia coli is composed of a large N-terminal hydrophilic region (aa 1-400), four transmembrane regions (aa 401-498) and a large hydrophilic region (aa 499-894) at the C-terminus. KdpD requires the signal recognition particle (SRP) for its targeting to the membrane. Deletions within KdpD show that the first 50 residues are required for SRP-driven membrane insertion. A fusion protein of the green fluorescent protein (GFP) with KdpD is found localized at the membrane only when SRP is present. The membrane targeting of GFP was not observed when the first 50 KdpD residues were deleted. A truncated mutant of KdpD containing only the first 25 amino acids fused to GFP lost its ability to specifically interact with SRP, whereas a specific interaction between SRP and the first 48 amino acids of KdpD fused to GFP was confirmed by pull-down experiments. Conclusively, a small amphiphilic region of 27 residues within the amino-terminal domain of KdpD (aa 22-48) is recognized by SRP and targets the protein to the membrane. This shows that membrane proteins with a large N-terminal region in the cytoplasm can be membrane-targeted early on to allow co-translational membrane insertion of their distant transmembrane regions.

Indexed as

Protein Sorting SignalsAmino Acid SequenceCell MembraneEscherichia coliEscherichia coli ProteinsGreen Fluorescent ProteinsMolecular Sequence DataProtein KinasesProtein Structure, TertiaryProtein TransportRecombinant Fusion ProteinsSequence DeletionSignal Recognition ParticleEscherichia coli ProteinsGreen Fluorescent ProteinsKdpD protein, E coliProtein KinasesProtein Sorting SignalsRecombinant Fusion ProteinsSignal Recognition Particle

Identifiers

PMID18433452
PMCPMC2440551
OpenAlexW2091113120

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.