ArticleGenetics2008
Estimation of pairwise identity by descent from dense genetic marker data in a population sample of haplotypes.
Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.
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Who cites it
49 citing papers in PubMed.
- Long-term isolation and introgression shape the genomic distinctiveness of Rice's Whale.bioRxiv : the preprint server for biology · 2026Article
- Census and genetic analysis of the United States marmoset population.bioRxiv : the preprint server for biology · 2026Article
- Assessing the impact of temporal changes in transmission on Plasmodium falciparum strains in Asembo, western Kenya (1996-2017) using within-host metrics via 24-SNP barcodes.Malaria journal · 2025Article
- Parental Reconstruction from a Half-Sib Population of Stoneless JujubePlants (Basel, Switzerland) · 2024Article
- The influence of gene flow on population viability in an isolated urban caracal population.Molecular ecology · 2024Article
- Biobank-scale inference of multi-individual identity by descent and gene conversion.American journal of human genetics · 2024Article
- Article
- Biobank-scale inference of multi-individual identity by descent and gene conversion.bioRxiv : the preprint server for biology · 2023Article
- The genomic footprint of whaling and isolation in fin whale populations.Nature communications · 2023Article
- Imputed genomes and haplotype-based analyses of the Picts of early medieval Scotland reveal fine-scale relatedness between Iron Age, early medieval and the modern people of the UK.PLoS genetics · 2023Article
- A look under the hood of genomic-estimated breed compositions for brangus cattle: What have we learned?Frontiers in genetics · 2023Article
- The critically endangered vaquita is not doomed to extinction by inbreeding depression.Science (New York, N.Y.) · 2022Article
- Benchmarking phasing software with a whole-genome sequenced cattle pedigree.BMC genomics · 2022Article
- Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information.BMC genomics · 2021Article
- Current Developments in Detection of Identity-by-Descent Methods and Applications.Frontiers in genetics · 2021Review
- Breeding for Climate Change Resilience: A Case Study of Loblolly Pine (Frontiers in plant science · 2021Review
- Article
- Probabilistic Estimation of Identity by Descent Segment Endpoints and Detection of Recent Selection.American journal of human genetics · 2020Article
- Novel insights on demographic history of tribal and caste groups from West Maharashtra (India) using genome-wide data.Scientific reports · 2020Article
- A Fast and Simple Method for Detecting Identity-by-Descent Segments in Large-Scale Data.American journal of human genetics · 2020Article
Corrections and comments
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Authors and funding
1 author.
Funding
Abstract
I present a new approach for calculating probabilities of identity by descent for pairs of haplotypes. The approach is based on a joint hidden Markov model for haplotype frequencies and identity by descent (IBD). This model allows for linkage disequilibrium, and the method can be applied to very dense marker data. The method has high power for detecting IBD tracts of genetic length of 1 cM, with the use of sufficiently dense markers. This enables detection of pairwise IBD between haplotypes from individuals whose most recent common ancestor lived up to 50 generations ago.
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Registered trials
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