Evidence map›Paper›PMID 18428877›Full record

ArticleCurrent protocols in nucleic acid chemistry2001

Molecular modeling of nucleic acid structure: electrostatics and solvation.

T E Cheatham, B R Brooks, P A Kollman

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Current protocols in nucleic acid chemistry, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

T E CheathamUniversity of Utah, Salt Lake City, Utah, USA.
B R Brooks
P A Kollman

Funding

Biomolecular simulation for the end-stage refinement of nucleic acid structureR01GM081411 · NIGMS · UNIVERSITY OF UTAH · PI CHEATHAM, THOMAS E. · 2008 to 2022
$2.7M
RNA-ligand interactions: simulation and experimentR01GM098102 · NIGMS · WASHINGTON UNIVERSITY · PI CHEATHAM, THOMAS E., HALL, KATHLEEN B · 2011 to 2014
$2.1M
NIGMS NIH HHS R01 GM081411NIGMS NIH HHS R01 GM098102
6 · The paper itself

Abstract

This unit presents an overview of computer simulation techniques as applied to nucleic acid systems, ranging from simple in vacuo molecular modeling techniques to more complete all-atom molecular dynamics treatments that include an explicit representation of the environment. The third in a series of four units, this unit focuses on critical issues in solvation and the treatment of electrostatics.

Indexed as

Models, MolecularNucleic Acid ConformationComputer SimulationNucleic AcidsSolventsStatic ElectricityNucleic AcidsSolvents

Identifiers

PMID18428877
PMCPMC4091950

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.